RNA id: XM_039790981.1


Basic Information

Item Value
RNA id XM_039790981.1
length 4311
RNA type mRNA
GC content 0.41
exon number 10
gene id slc33a1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23802515 ~ 23809452 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTCGCACACGCCGCACTTCCTGGTTCTTCCGTGTTGATGTTCACAGATGTAACCTGGTTTAAGTCAAACGCTGTTTGAGTTCCGTTTTTCTTATTTGGCATGCAGTCATCATCACCAGATTTTCTGAGGGCACAACAGGTTTGATGCCCACTTCTCCAACATGGAGCTCTCAGATTTGATGACACACAAGAACGGGCGGCATAGGAAGATGGCGGGTGCCACCAACCAACCTGAAAACATGAGGTACATGGACAAAGAAGAGAAGAGCTCCTCTGAACCAGAAGTAGAAGAGGAAGCAGAGGGTCTTATCAGAGGGTCAGACTCTGAGGACAGGAGGCACAGAGTCCGGCCTGGGATCCGTGGCGAGTTGGGGAACGTGTTGCTTCTTCTGTTCCTGTACGTGCTGCAAGGGATTCCTCTGGGACTGGCTGGTAGCATCCCTCTGATCTTACAGAGTAAGAGCGTCAGCTACAAAGACCAAGCCTTCTTCAGCTTTGTCTTCTGGCCATTTAGTCTCAAGCTTCTCTGGGCGCCTCTGGTGGATGCTCTCTACTTTAGCAGGTTTGGTAGAAGAAAGTCATGGCTGGTGCCCACACAGTTCCTGCTGGGCCTCTTCATGCTCTACCTTTCTGGGACGGTCGATTCCCTGCTGCAGAGTGAGGGAGGACCGAAGGTGGTAACACTTACTGCCGTCTTTTTTATGCTTGAGTTCCTGGCAGCCACACAGGACATAGCTGTGGACGGCTGGGCCCTGACTATGTTATCCAGAGAGAATGTGGGATATGCGTCTACATGCAACTCTGTGGGCCAGACAGCTGGATACTTCCTGGGGAATGTACTCTTTCTGGCTCTAGAGTCTGCAAACTTCTGTAACAAATACCTCAGAGTAGTGCCCAAGGACACAGGCATCGTCACCTTGTCAGACTTCTTGTTTTTTTGGGGAGTGGTGTTCCTGGTGTCCACGACTTTGGTAGCCATCATTAAAAGGGAAAATGAGCAGGGCAAAGGAAAGAGGAGAGTCCATGAGGAGACCGAGGGCGTCATGGAAACCTACAAGCTGCTGTTCTCTATCATCAAGATGCCCACTGTCTTCACCTTTTGTGCCCTGCTTCTCACCGCTAAAATTGGCTTCTCTGCAGCAGATGCAGTGACGGGTCTGAAGCTGGTGGAGGCTGGAGTTCCAAAGGAGCAGCTGGCATTGCTGGCAGTGCCCATGGTGCCTCTGCAGATCCTACTACCTGTGATCATCAGTAAATACACAGCAGGGCCCAGACCTCTGGATGTCTTCTACAAGGCCTTCCCTTTTAGGTTGCTAATAGGACTGCTGTACGCTCTGCTGGTGTGGTGGACCCCCAGTGTGAAAGAAGAAGGAGGGTTCCCTGTTTACTACTATGGCATTGTGCTGCTTAGCTACGCATTGCATCAGGTGGCGTTGTACAGTATGTACGTGGCCTGCATGGCCTTCCATGCCAAAGTGAGTGACCCCCTCATCGGCGGGACCTACATGACCCTGCTGAACACAGTCACTAACCTCGGTGGAAACTGGCCCTCCACTGTGGCTCTGTGGATGGTGGATCCCCTGACCTCAAAGGAGTGTCAGGGGGCTGTCGGGCAGAGCTGCGGCTCTCCAGACGAGGCCGGGCTGTGCGTTAAGGAGGGCGGCGTTTGTGTGACTACATTGGACGGCTACTACGTGGAGTCggtggtgtgtgttgtgattggtttagccTGGTGGGTGTGGTTAGGGAAGAAGATGAGGCGGCTGCAGGATCAGAGCCCCGCTGCATGGAGGTGCAGAGCTAATCAGTGATGACCGTATCATCAGTACCACAGACTCTTATTTTCTTGCACCTCCACATGCTCTGCTCCGAAAACTGTTGAATGGTGGACACACTTTTATTCCATTCTCATCTGTCTGATTTAGTCCTTCCGGTCCTGCTCTAGCTGctgcgtttaaaaaaaactcttacACTTTCTCACCTCTGTCACCTTAAAGTACATAAATCTGATGAAATATGCCGTTGGTTGGCTCTCTGGAGGGAAAGCTCCTTGTCATTGTTACTTGTGTTAACTGTAACAGTGACCTGAATAGTAAAACAACAGGTCAGATTAGCTTTTTGAAgaacttgttttagtttttttttttttttttttaaaccatcctGCTGCTTGCAACAGCCTAACCAAACGATCGCTGGGACAAAGAGTTTTTTCAAATAACTTTCTGAGTTTGTTCTTACCTGCTTGGATAGCCAGTTTGAGTTTACTGTGTACAAGTACAATTGAAGTTGTTCTGTGCCTTTTTGCCCcaaatgtgaaataaaataacttGATCCCCTCCACATAAAAGAAATCTTGTAAAGTAACATTAGTAAACTCAGCACTTCAGACTCAGCACTTCCCAGCCAGTCACCATTTAATCTCTATTAAAAGGATACTAAAGGGAAAAGACAGGCAAAACATACCAATGCACTCCTCCAAACTATCTGAAGTGTCCTGATGCTGGTTAGTCCAAGTAAATTAAACCCAGTGTGAAGACTATCTTTCATTGCTGTTTGACTCAAATctgaatattttttatttttttattatttattattattattattattattattattatttaattagaGGTGATTTGTGCCTTGTTTAGTGTTTCAAAGTCTTTAAAGCCAATCTTGTTTGAGTTAAATTATCAAGGCAGGGAATGTTAGTGTCATCTGAAGATGAGGTTGTTAAATTGATGAACATCCATTGTGTAACACTTGTTTTCTGTAATACTGTAGTTTGGTAGATTACACAAAACATGACTACTTCAGTTATTtctttacttgttttttttttttaaatacttactCTAGAATATGATGCTGAGCACATTCCTAATGAATCATTTTATTATTACCAATATCAATGGTTAAATGAACTGAGATGTCTAagatattaaatgtttttttgtagaagcaatcttttatttttccaaACGTTCCTTAAATCGGATTAGTTTTACCCGATATAGGACAAATTTGAATCTTTAATAGCAATATTGGACGGTGCAGCTTTAAACTGTTTAAACCTCTTGGTTATCAATGTTGGTAAATTGTTTTTGCTAAGGTATTTTTAAGTTGCAAGAAgaaaacaaattcaaaatataatatGCACactaaatttctttttttttaatcagactCTCCTGAAGTAGGTCTCGCAGCATTTTCCAGTTTTATTGATGCATTATGCTGTATACTAACTATGAATGCAACTATTTATTACAGGAGTCCTATAAGACCTTTTAACATCTATAAAGTCAAGTTTTGCAGTGTAGATCAAGAATCTCTCCGCGGATCCCAACTGAGTGGGACATTAACACCAGCctaaaaagtatgtaagtaattACATAGTGAATTTTTTGCCCTCCAAAAACAATTCAGATCCCAGCCTCAGTGAGAAATTTGATAAGAAGATATCCTGTTTGTTTTGCATATTGTACATAGAACTGAATGTTACAGTATTTTCTCTGAAGCCAGCATTGAAAGTCCAACTGCTGTCAAATGTAAATGTTGAAATACACAATCAGGGTTCATGTAAGGATAAAAGCTTAATTTGTAACTCATTTTGCATTTAGTAGTAATAGTTTCTGATGTCTTATACCAACTTTGTCAACCACATGTAAAAGGTCAAACATTTTTAGATTACCATGGTAGCAGTTGTCTGAAATGCACAGAAGTTCCTTTATACTGCACATTAATGAATCAGTTTAGTTCACTTTATACTACATGACTTTGCTTTGATGTTTATTGGGCATTTCATTTGTATTTGTACCAGCATATCACTGTAATATGACCATAGAAAATATGACTCGTTTTCCTGTGAACCTTTTTGCCATTAACAGGGCACcatatttgttttgattttctttGACAAACATTAGACAATGTGACCGTTGATTTCAGCTATATatgaatttgtttttatattttagatcaGGGTTTTTACTTTACTCTGCTAAATTGGCTTTTAGGTGGTAGTaaactgttacttcagaatttCAGCAGCAGGAAGTTCAGTGTTTTAATTTATCTCACAATGTTACCTCATATCCTTTAATTGATTtcttttgaattgaattttttttttttactttgaacaATTTTAGTTTGAATCCAAATCCCCAATCATATAAAAGAGGATAGCACAGGGTGACAGTATCTTGAGAAATTTCAATATGCTAGCAGCAGACAACTTTGACACTCATAGGATGCAATGTTAATGAgatttgaaattaaaaaaaatttaaaaaccaaATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26125 lncRNA downstream 14828 23785238 ~ 23787687 (-) True G19126
TU26014 lncRNA downstream 237273 23565003 ~ 23565242 (-) True G19045
TU25999 lncRNA downstream 330791 23464963 ~ 23471724 (-) True G19033
TU26000 lncRNA downstream 332795 23464963 ~ 23469720 (-) False G19033
TU25985 lncRNA downstream 341471 23453547 ~ 23461044 (-) False LOC120574680
TU26139 lncRNA upstream 8154 23817565 ~ 23818438 (-) True G19137
TU26163 lncRNA upstream 174660 23984071 ~ 23984458 (-) True G19158
TU26205 lncRNA upstream 216807 24026218 ~ 24026684 (-) True G19189
TU26207 lncRNA upstream 219216 24028627 ~ 24031253 (-) True G19191
TU26240 lncRNA upstream 355667 24165078 ~ 24165298 (-) True G19224
XM_039790983.1 mRNA downstream 9539 23788779 ~ 23792976 (-) True tubd1
XM_039824880.1 mRNA downstream 43689 23730503 ~ 23758826 (-) True atm
XM_039784463.1 mRNA downstream 109138 23613832 ~ 23693377 (-) False dscamb
XM_039784432.1 mRNA downstream 109160 23574700 ~ 23693355 (-) True dscamb
XM_039825265.1 mRNA upstream 151343 23960754 ~ 23964467 (-) True ssr3
XM_039825785.1 mRNA upstream 382060 24191471 ~ 24281835 (-) False veph1
XM_039825802.1 mRNA upstream 382060 24191471 ~ 24279119 (-) False veph1
XM_039825778.1 mRNA upstream 382060 24191471 ~ 24279119 (-) True veph1
XM_039825795.1 mRNA upstream 382060 24191471 ~ 24279118 (-) False veph1
XR_005641870.1 other downstream 43689 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 550095 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 654000 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 654000 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1795344 22001904 ~ 22007171 (-) False LOC120551419
TU26143 other upstream 14410 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 438620 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 2497653 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 2511529 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 2511531 26320942 ~ 26334687 (-) False LOC120570356

Expression Profile