RNA id: TU26143


Basic Information

Item Value
RNA id TU26143
length 2290
RNA type TUCP
GC content 0.41
exon number 4
gene id G19140
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23823821 ~ 23827954 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCTCAGTTTTCCATTGTACAAATGTCATCATAGTTGAAACTGCATGCAGTGGCTTAATTTGAGGCACGTTACTAAGGAGAATGGGCAttgaacaaacatttaaaataaaaaataaaaataaaaaaaaaacattaaattgcaTAACTTAATCTTATTGATATTGCAATTAAATTCAACTACAAAAGTATGTGTCCAATTTTATTAAGTTGTTTTTCTGTGGAGACATGTAACAGAAAATACACGTATTAAATGCAGAACAGAGGGAGAAACACTTATAGCAGTTAAGACAAGTTAGGAAAACAATTCATTTTGCATTAAGAGTATTTTTGCCACTAAAGCTTAAGGAGATAACAGAGGATGAGGCACAAAGACAAATACTGGAGGCATGAGAACCACCGCGTCCAAGTGAAATGTCTCTATCGGGGTACAATACGTTTTTAAATCTCAGTTAAACCTGAGCACTGTATTCACTGAGGTCTAAACCACGAGAGACACTAGAGAGTATGATGCACTGCATGTTTTGAGATCAGAAAAATGAAGCATCAAATGCCTTTTTGAGACAAAGTGAAGTTACGTTAGAGATGCCAACAGACAGTGCTCTTAAACTGACGTTTAACACTACAGAGATATGggtgaaaaactaaaaagacaACGTGCAAAAATGTACCACTGCACAACAAAAGAACAGCCAAATAATGATGAAATGACAACAGCAATTTACAGAATGTGGTTATAACTCTACCGTGCTTATAATTTTGTCATTAGTTAGTCCTCCCGTCATGTTTATTCTTCATAAAAAGCTTACATATTGCAGCATGAGGAGAAACGATGTTATATCCTCCTTTCTGGAAACATTAAAGTCCAGGTCAGGTCACACCAACGAAATAAACAAAATCAATAGAACAGGCACATACAAAGTTACCCATCATATTGGCCTCCTGCACACTAGTCATCATACTGAAGCTAATCTTGGTTTGACTGCTGTCCACaatgtgctacagcagcaagtCAAGAGCTCTGGTCAACAAATGTAGCTTGGAGAAGATCGTCAGATGAACCCACAATGTTATATATCAACACAGCATATATTCTACTTTTGGCAAAACAAAAAGCTTAAAAATTGATTGGTCACATTGGTtgcatttttagtttttagtttaaaaacagGCAACCTTCTTCATAGCACAGTATACAggcagaaagtgaaaatggacaaatagagaGAATAGTATTCTGACCTACAACAGTGAAACAAAAAACATCTGACAAAAAAGGCAGGAAAACAATTGCTGAAACTCTCCTTCTGttcttttcatgacttttgtttgcttgtttttatgtttagcTCGTCCCATAATGCAACCTGAGGCACAACATGAAAGTCTACTTTCTGAACTTTCACAGCTTCTTACTGCTCGCCTTTAATGGTTGACCttacaaaaaaaaggaagcagCAATTTATCTTTTCATCATAAGAGAGGAAATACATTGATGTACATGGATCAAAAATGACAATATATTACCAATAACCAACATTAATCAATCCATATTGCCAAAAATATTAAGACCAGGGAGGAGTGGTAGGGAGAGCAGAGTAGTAGCGCCTTTGCATGTGCGCCCGTCACAGTACGGTCTGCCTTCCGTGGGAATGTTGAAGAGAGGGGTGGAGGTACATGAGGGAGGGTCGGGGGTGAGGAAAAGTAGGGAGATAGGAAGGACAGACAAGGAGAGGAGTTCACCAGCCCTCTCGGATATCTGTcgagtgtgtttgtgcattgtgtgtgaGTCCCATCGATACGACATCATGTTGGGTTTTATTCCCACTCTGTGGTGCCAGGCGGTTTGGAGGTCAGATCATACATGACTCTGGAGATGCCTGGGATCTTCTTGATCTCATTCACCATCTTCAGCACCACCTCCTCTGGGATATGGTTGCCCGGCGTGGCGGGGATGCCGGTCATGAAATCGCTGGTGATGAAGGTGCGGACCACCACAGAGCGTCGGCAGGATGGCTGCTTTTGCAGTGGGTCACGGTCAAAGTGCAGGGGGGTCAGGATGACCGGCATCTGGCTGATCTTACCGGAATAGCcagACTCTCGAAGGATAGAGTGAGCTACAAAGTCAGCCTGTCTGAGCGTGCTCAGAACACCTGTGGTCAGGAAAGTTGGGGTAATGTCTGTTGGCGGCTCTTTCATGTGGGacccaaacacatacacaactCTGTTGATGCTATGGCACATGCGAGGGATGAGTCTAGCCAGGAACATGAGAGATTCCCAGTGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26139 lncRNA downstream 5383 23817565 ~ 23818438 (-) True G19137
TU26115 lncRNA downstream 19871 23802566 ~ 23803950 (-) False slc33a1
TU26125 lncRNA downstream 36134 23785238 ~ 23787687 (-) True G19126
TU26014 lncRNA downstream 258579 23565003 ~ 23565242 (-) True G19045
TU25999 lncRNA downstream 352097 23464963 ~ 23471724 (-) True G19033
TU26163 lncRNA upstream 156117 23984071 ~ 23984458 (-) True G19158
TU26205 lncRNA upstream 198264 24026218 ~ 24026684 (-) True G19189
TU26207 lncRNA upstream 200673 24028627 ~ 24031253 (-) True G19191
TU26240 lncRNA upstream 337124 24165078 ~ 24165298 (-) True G19224
TU26295 lncRNA upstream 342807 24170761 ~ 24178876 (-) True G19264
XM_039790982.1 mRNA downstream 14369 23802515 ~ 23809452 (-) False slc33a1
XM_039790980.1 mRNA downstream 14405 23802515 ~ 23809416 (-) True slc33a1
XM_039790981.1 mRNA downstream 14410 23802515 ~ 23809411 (-) False slc33a1
XM_039790983.1 mRNA downstream 30845 23788779 ~ 23792976 (-) True tubd1
XM_039824880.1 mRNA downstream 64995 23730503 ~ 23758826 (-) True atm
XM_039825265.1 mRNA upstream 132800 23960754 ~ 23964467 (-) True ssr3
XM_039825785.1 mRNA upstream 363517 24191471 ~ 24281835 (-) False veph1
XM_039825802.1 mRNA upstream 363517 24191471 ~ 24279119 (-) False veph1
XM_039825778.1 mRNA upstream 363517 24191471 ~ 24279119 (-) True veph1
XM_039825795.1 mRNA upstream 363517 24191471 ~ 24279118 (-) False veph1
XR_005641870.1 other downstream 64995 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 571401 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 675306 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 675306 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1816650 22001904 ~ 22007171 (-) False LOC120551419
TU26301 other upstream 420077 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 2479110 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 2492986 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 2492988 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 2492988 26320942 ~ 26334687 (-) False LOC120570356

Expression Profile