RNA id: TCONS_00006732


Basic Information

Item Value
RNA id TCONS_00006732
length 2848
RNA type processed_transcript
GC content 0.44
exon number 15
gene id XLOC_003446
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24339362 ~ 24356093 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGACGAGACGTGCACGCGCAGGGATTGTTTGCCGCCAGTCAGTTCGTCGTTTATAACCGCAACGCACACATTGTGACTAGTATCAATTGAAACGACAAAGTTTTGGCTTAATATAATTGTGTTTTTTAGGTTTGCGTGGATTCGAATCAATCGACCAGGGTTGCAACTGTAGCTGAAACGGACCGTAGATCCGGGATTTACCGCTCGTTTGTGGAGCCAAGACTGTGACGCTCTGTAGGCCGCAGTGTAACGTTTTAAGatcaacaacaacaacatggccGATGATTTGGACATTGAAGCAATGCTCGAGGCTCCATATAAAAAGGATGACAACAAGTCCTTAAGTACCAATGGCCACGAGGAGCGGAGCAAGAAaaaaaagaggAGCAAAAGTCGCAGCCGGAGTCGGGACAGGAAGAGAAGCAAGAGTCGCGAGCGCAAAAAGAGTCATGACCGGAGGAGGAGCCGCAGCAGAGACCGGAAGCGCAGCCGCAGCAAGGAGAGACGTCGCAGCCGTTCTCGGAGCAGGGAGCGCGGCGGTCGCTACAGAGCTCCATTGTAAGTGACCAACTTTTGCTTTGGGTTGTAGTCTTTGCCAAATGTCCATAGAGTTCAGACATGGCACTCATGATGTAATATGCATGTTTAGGccaatcaaaatgttttttttactgtttggttttattttaattgcatcaCACCAGTTCATTATTTGATTCAACTTCATGAATGTCATAGTCTTTAACCTGAAGTAAAAGGTTCTCATGGTGCCCATGGAGGGTATGAGCATGTCTTGCAGGGAATATTACCAAGAAGGCAGAGGAGTATAGTGTCTATCCTGTTCGTTATCATTAGTGAATAAGCAGAGATGGGTTGACTCCCCCACAAAACAAGGCATTTGCTGTAATGTGTACAACATTCATCCTTGTTCCCCATTGAAGCTTGCGTGTATATTTAGCGCTAGCAGTAGAGCAATTAGTCATAGATACTGAGATTAAAAACCTTGAAAACCTTGTTTTTAAATCACAGTTCTGGCCTGAAATTTAACGGTGGTCCCAGGGGGAAGACTGGCCCACCACCTGCCATCAAACTAAGTCGAAGAAGGTCTAGAAGCCGAAGTCCTTTCAAGAAAGATAGAAGCCCTGTAAGACAGCCCATTGACAATCTCACCCCTGAGGAAAGAGATGCTCGCACAGTGTTCTGTATGCAGCTGGCAGCCAGAATCCGGCCACGAGACCTAGAAGAATTCTTTTCTGCAGTTGGAAAAgTACGAGATGTGCGAATCATCTCTGACCGAAACTCCAGAAGATCCAAAGGAATTGCTTACATTGAGTTTGTGGATTCCACATCTGTACCCCTGGCAATTGGTCTATCTGGACAAAGGCTTCTTGGAGTACCAATCATTGTCCAGGCTTCACAGGCTGAGAAGAACAGAGCCGCTGCATTGGCCAATAACTTGCAGAAGGGCAGCGCAGGACCCATGAGGCTCTATGTTGGCTCATTGCATTTCAACATCACAGAAGACATGCTCCGAGGCATTTTTGAACCATTTGGAAGAATTGATAGTATCCAACTGATGATGGACAGTGAAACAGGACGATCTAAAGGATATGGTTTTATCACATTTTCTGATGCTGAATGTGCAAAGAAGGCACTGGAACAGCTTAATGGCTTTGAGTTGGCTGGTAGACCAATGAAAGTGGGACATGTGACGGAGCGCACAGATGCCTCCACCGCCAGCTCCTTCCTGGACAACGATGAGCTAGAAAGAACCGGTATTGATCTGGGGACTACAGGAAGACTTCAACTCATGGCCAGATTAGCTGAGGGAACTGGTTTGCAGATCCCGCCCGCTGCACAACAGGCCCTTCAGATGAGTGGCTCCATGGTTGCCATGGCTGCAGCTACTGCTGCTATGAACCCTGGATTGAGTTTTAACATCAATGTGCCAACAAACCAAGCCTTGAATTTACCATCACAACCCATCGCAACACACTGTTTCCAGCTGTCCAACATGTTCAATCCAAACTCAGAAAATGATCATGGTTGGGAAATCGAAATTCAGGATGATGTCATTGAAGAGTGCAACAAACACGGTGGAGTCATACACATATATGTGGACAAGAAATCTGCTGAAGGTAATGTCTATGTGAAGTGTCCCACCATTCCTGCTGCCATGGCTGCAGTCAGTGCGCTACATGGACGCTGGTTTGGAGGTAAAATGATCACAGCAGCTTATGTCCCGCTTCCTACATACCACAACCTTTTCCCAGAGTCAGTGCAGGCCACACAGCTTCTAATCCCCAGTCGTCGGTGATCAATCACCACTGTACAACTCCACTTTTTCAGCCTTGCTCTTTTTAACTTTTGGACAATAATAACAGTTCTGCAAGTTGTGGCACAGGTGTGGTAAGGTAAAGTTTCACTTGCATACTGTCCTTACAGGTCATGGACAAGTTctgtggttaaaaaaaatcctATGTACAGCCTACTTATTGAATTTTGCTTCTTGATCTTTTATTGTTGGTACATATTTGTTTTTCTCTTCCACATTTATTGTCTCTGTGAAAGATCTGATTGGTATGTTTATCACTCGAGGTAGTGTATAATAATACCAGAAACGCAGTATAAGTAAGTCTTGGATTCAAACTCTTCAATTTTGATCAAATGTCAACATATTCAACTTTTTGGCTCTATGAGCTGTGGGAACTAAATGGCTGACAAATATCTTTTGTTCATTTAGAGACCACGAGGTTTAGAAACATCTTGTTTTtctaatcaagattttgatttttgtAAAGTTCTTGATGAAAAGTTCATTTCAAATAAAGCAGAGATAACTGAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2852 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).

Ensembl:

ensembl_id ENSDART00000139298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008610 lncRNA upstream 87758 24120291 ~ 24251616 (+) False XLOC_003442
TCONS_00008400 lncRNA upstream 161723 24176418 ~ 24177651 (+) True XLOC_003443
TCONS_00006722 lncRNA upstream 188157 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00008608 lncRNA upstream 255786 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006773 lncRNA downstream 555058 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 714041 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 836436 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 836671 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 866235 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006730 mRNA upstream 7322 24316110 ~ 24332052 (+) True XLOC_003445
TCONS_00006727 mRNA upstream 8056 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006728 mRNA upstream 9182 24313994 ~ 24330192 (+) False XLOC_003445
TCONS_00006729 mRNA upstream 10723 24314148 ~ 24328651 (+) False XLOC_003445
TCONS_00006726 mRNA upstream 28729 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006745 mRNA downstream 3004 24348425 ~ 24356093 (+) True XLOC_003446
TCONS_00006747 mRNA downstream 275321 24620742 ~ 24658494 (+) False XLOC_003448
TCONS_00006748 mRNA downstream 275397 24620818 ~ 24664031 (+) False XLOC_003448
TCONS_00006749 mRNA downstream 294322 24639743 ~ 24662785 (+) False XLOC_003448
TCONS_00006750 mRNA downstream 294322 24639743 ~ 24663227 (+) True XLOC_003448
TCONS_00006723 other upstream 160436 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006700 other upstream 941989 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1625243 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2688736 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3287030 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006746 other downstream 235158 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006769 other downstream 535888 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 556457 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 635498 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 649312 24994733 ~ 25025497 (+) False XLOC_003461

Expression Profile

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