RNA id: TU26464


Basic Information

Item Value
RNA id TU26464
length 2794
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G19412
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 25430426 ~ 25466506 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttcccaaataatctttatttaaaatacataatGTAATGACAGCTGCTTGTTCAAAAGCAGCACGGTGCAAGCATTAGTTTGGTGTTCACTAACATTTAAAGTGATACAAGAGCAACTGTTTAGGCCAAACTCATAGCCAGAGATGGTAAACAGTGATGCACAATGATAAATATGTCTAATACATTACACAGTatcaatgttttgtttgtttaattgtttCTGATtgagaaatacagtatatacagtaatgtATATGACTTCATATTGCTAACAAAACttccctggttaaaaaaactgCACTAAATTTGCCCCAAATGTTAACCTTTCATCACTCTATGGGTCAACCACACAAACCCTGCAACTTAAACATGCatgatcacacacagacaccagtgTCCCAGTACAGATAGTGCTCCCCCAACCAAACAACTCTGCAGTTATATGCATTTTGCCAACTATTCAATTTAATTGTTGTTCTTCACAGCAGATTGTGTTAAATGACCACATTTATCACACAATACACCACCTATAATCATAAAatcataaataataatttaaaaaaaaacattaaaaagaccCTATTAAGTAATAGGCGTAAACACAGACCTgtacaatgtttttctttttaaacaatatCAGAAACCAGGACTGGCCAAGCCACCAGATTTGGAAGTGCCAACCACTCTCCAATATCTGGATGACCCAGCTAACCAGCTTGAGACATTACAGGTATCATAGAGGCATCGCTCTGACCGCTGGTCTGTCATCACACCCTTTAAGTTATAACATCATAGGAcattcagagacaaacaaagCTTACATGCTGCAACATGTAAAAGAAGACAATAATAAACAGTGATCTATTCAagagaatatatatttttttaacatttaaggtGCTCCAaccaaataaattataaaaaaattcaCCACCAATACATTTCCCATTTAACCATATAATCACCATGCCCCACAGCCCCACATTCCAATATACAATCTTATTAAAGTGAGGTTTATATGCTTTCCTTTTTTCCATTATATTCACATGCTCTCCACTATGATTATATTAGAATTGGTATAAATGTGTCAATGTGCAAAACAATATCTACAGTTTTAACCAACAGTGTTGAGGTAAAGGTATTACTTTGGAGACAGAGCTAGGATGTACGTTTTAAAACCTGTATAACTTTATTATATTAATCTGCTTTAAAATACACACTAACGTGTTTGTATTGAGGTGCAATGGCTCAGTTTAAagtgtttctttttaaaatctCTATAAAACAGGGCTCCAGTTGGAGTTAGAATATAAAGACAGATTATTTGTGCGGAAGTTTTTTAGTTTTCTTCATAATATGACATATTGAAAGTTGAATTGTTTTTTGATATTTTACAGGAGGCAGATGAAACTCATCAATGTGCAACCAAATATTATTGAgactttatgaatgaaatatgcATGCAAAatactactgtatatatatgtcttGATAAATGGTGCCACCTGATTGCTAGAGTGAAAGCTTAAACATGCTATAGCTTTGGCACACATTGCTGTGGTTTTATGGAAGTTTCttacttttttataacatttttcTTTCTGATATGCACTGTTTGACATGCACTCATGGCAGTATAGTACAATGTACATGCTTTTAGTTgccaaaataacacattttaccAGTTTTTTGTCAGTaatctcttctctgtctctcagttATGGACATAAGCTTCTTATATTTTAATTTGGATCATTTGGTCACCTGTCTGTGCCTAGTCTTCTGTTAGGGCAACCTTTATTAATTCCTAccataaatattaataattgtTTGGCTCAAACAGGAATTATGTGATTGTGGGTGCAATGTgagtttttttccctttaaatTGTCTTTGATATGTTTTTGACTTTGACAAAAATGCTGTCATGatgtcaacaataatgcacttCACTTTATCTCTAACAACATACTTCTCATCCAGTGCTAGCTTTATTTGAACTGTAGGGAAGAATTCTGAGAGGATATGTCAACACTGTCACTGACAATTTTCCCAAAGCAAAGTCTGCAGTTGCACAAAGTATTGCAGTCACAGATAGTGTAAGTCTTGTATGATCTAGAAAACTTATTTTAACCCTGTAAATAACCGACTCAACAGAAATATTTGCCTGCTACTCAAACTTCTTTaatcacacacactaacatatcATTCCTCTAGATAAGGCCGGGATGGATGCAGACATTTCTGTCATACGGTTGGGCGGTATAACCACTAATGACATACAGTAGATATATTAAGATTTGGCTATGCTGTTTGTATTAGTTTGTATTTGTAATTAAATTCACATAAAGTCCTTCGGAAGCATTACAACTAACTGCATGTTAATCATTGCAGTTGTTCATTTAGGCAACGTCACTAATCATCAGACCAATAAAAACATGAGCCTACCGATCCCCTTTTACactaaaaaaacactttgtgcATGCTAACAAAAAGTGGATGAAgaaataaagacagacagaagacataTTTGGCAGGGCCAAAATATGAAGCGATTATGTTAAACATGTTGCTTCAACTGCCTTTTTAACAAGCCATTTTGACAGgtcaaaatagaaaaagaacTTGTGTAAATACtatcattaatgatggctgaattccatttagccgCTTCAGTTTCAGAGTACTGGCATTAttcatgctggctcactgtcacactggcTCTGTCTGAAATCGCTCCCTTGTTTATTCACTACTCCAAATATGAAATTTCAtgctggctcactgtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26447 lncRNA downstream 16904 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 74694 25355522 ~ 25355732 (-) True G19399
TU26429 lncRNA downstream 332968 25097219 ~ 25097458 (-) True G19383
TU26427 lncRNA downstream 376119 25054004 ~ 25054307 (-) True G19381
TU26399 lncRNA downstream 495413 24934754 ~ 24935013 (-) True G19356
TU26503 lncRNA upstream 156480 25622986 ~ 25667229 (-) True G19438
TU26546 lncRNA upstream 254987 25721493 ~ 25731115 (-) True G19466
TU26638 lncRNA upstream 612418 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 657731 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 702168 26168674 ~ 26170568 (-) True G19566
XM_039822720.1 mRNA downstream 379653 25042764 ~ 25050773 (-) True LOC120573181
XM_039822705.1 mRNA downstream 472241 24950375 ~ 24958185 (-) False slitrk3a
XM_039822696.1 mRNA downstream 472256 24950375 ~ 24958170 (-) True slitrk3a
XM_039822684.1 mRNA downstream 508974 24825023 ~ 24921452 (-) True si
XM_039778017.1 mRNA downstream 1074930 24336057 ~ 24355496 (-) True serpini1
XM_039790509.1 mRNA upstream 173473 25639979 ~ 25699538 (-) True megf6
XM_039790404.1 mRNA upstream 242286 25708792 ~ 25711415 (-) True dnaaf1
XM_039790567.1 mRNA upstream 271984 25738490 ~ 25741735 (-) True slc19a3a
XM_039790575.1 mRNA upstream 271984 25738490 ~ 25741133 (-) False slc19a3a
XM_039822503.1 mRNA upstream 276000 25742506 ~ 25747180 (-) True slc19a3b
TU26301 other downstream 1177513 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 1602472 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 1671600 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2178006 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2281911 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 840558 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 854434 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 854436 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 854436 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 967775 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile