RNA id: TU26546


Basic Information

Item Value
RNA id TU26546
length 2716
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G19466
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 25721493 ~ 25731115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACCTTGCTCTGTTTTGGCAGAGCTAAGCACGTTTTCCAGGTCAGCCAGGGCTGCGTATCTATCGGCAGGGAGGCTAGTACTCTGTACAGCATCTCTGCCAGCTCCTGTGGAGTTATTCTGGGAGGAAGAACTGAAGGATCCAAAGTCAGCACTACACGATTTGGGGAAGTTGTCAAAATGTGCAAAATTGGCATTTGCTAGTCCCCCTGAGGCGCTACCTGcCTGTATTTGAGGGATGGAATGGGGCTAGGGTTGCGGAGGGGAAACCACCTGTTGACCCAGAAGTGCTCCTGAATGCATCAAAATTAGCAAAGTCTGCATTTGCGCTGGCATTCTGTGCTGTTGTGTGGCTGTTGAAATGTGCGAAGTTAGCAAAACTGGAGCTGGCGCCTGCATTCATGTTGGGCGGGGCAGCAAAGATATCTCCACCCAAGTCACTGAGGAGGTCGAACCTCTTGTCATGGAACTGCTGCTGATGGGTTTGTCCACGGCTCACCACTGGAGAGGTTAGGTGGGGTGTTCTTGTTGAGGTGTAGGGTGGGGGCCGACTCTCCCAGCAGGGATTTGAGTGGTCTAACCTCTGGGgtgctgctggtgctgctgtTTGAGGAGCCAGAGATGGAAGCATGGACAGATGCCACTACCTTGGCCTGCTCAGGAGGAACGTACCATCTCTTCTTCTCATATTTCTCTTGAAGGAACTCCTTGACCTTCTGTGGTTCTCTGAAGTCTGGTATTGAGGAGGTTCTGTCATCATAAAGGCCAAGCCAGATCCGTTTACATACCTGGAACAACCAGGGGAACAGAACAAATGGTAGAACATTTCTGTAGCACACACGGCTACAAATGAATGCGAGCTCGTCAACCTTCATAATTAGCCATTACATTGTTAAGCCAAAGTGAAAAGGCATGGGTAAAACATAGTGACGATATATTTAAATCATCTTTAACCCATTAAGTGCATGTCAAATTCAAAAGAGCATTTAttggtgttttaaaaatggAACTATGTGCAAATTAGACCAGGTCTATTGCATATAACTGTCCATTTATGTTGTGCACTGCACAGACGAACATCTTGGCGATGTTTGGTACAGTCAAACATGAACCGGCCCATGTTCTGAAACACAGGTTAAACATAGTTGTTTGGTCTCACCTTTCTCTGGCCTAGGGTTTTGGATAGCATTCCTAAAGTATTTGCCTAATCCTATAAAGGgagatttataggcttcatgcaTGTGTTCACCCAGTATAGGGTGCTGCATTGTAGCTAAAGCAATGGTGCTGCAAGAGGCAGTGTGGCTCTTAAGTTGTGCATGAgcttttgctgctgctgtttctttAGCTGGATTTggtgcacatgcacacaaactcaTAGTACATGCAAGCTCACTTTATTTTTAACCAGTAGGATTTTGAAACTGCAAGTGCTGAAAATATAAAGTTCTGTGTCAAGTGCTTTTTGTGGAAAGACAAAAAGCAACTTGACAGCAGTATTATTTATATAGCAGCCTTGAAGGATGTATGCATCAGCTCCAACCTTGAATCTCCTGCATGTCTGCCTGCTCTGCCACTATGCTACAGCTTTTAATAGGCTGTGCTTCCCAGGTGGCATTGCTCCATTTCATACTCTGGTTACCCGAAATGGCTCatgaatgatgatgatgcaCTGGTTCCTTCGTGCAGTCTAACCATTTatataatttgacattttatttaactATTCATTCTGTTAGTACTAATGTCACAAAAATGCCATATCATGCAATGATGATATTtctgttaaatgtttttttcaaaaaaaataaaaaataaaataaagagaggCCAGTAATACTGCATTTGCCCTAAAGTCTGTCTGACCAGACCATGTTAGGGCCCCCTGGTACTGTTAAATGTTTGGGTAAAAGAGTAAGTCATTGAAATTTACTGCAGCTTTTAATGAAaaagtttaaattaaaaacttaATTTGCATTAGTTGATTTATAACTTTCTACTGTAATAGGATAGTGTACGGGTcctaaaaatctaaataaaatagCTATATTCATAATACGatgatatttataaaaaaaaaaaaaaaagaaatactaaaTTTGGCAAAATGGCATTATAATACTGCTATAATAATATTGAAGTGCCATGCATTTTCtttctaatattttatatatcttGTCTTGCGTTTCTGGCTTATGGTTGTCCTCTACAGTCCTGGTTGTGAAGTGCCAGATACTTGCATGATGAATTACGGTGTGCAACCGtgacagaacagacagacagaccgaccgACTACCTCATTGCCATGTTTTTGTAGAAACTCGATTTCCTGTTGCGTGAAGGTCGTCATGGAGATGGACTTGACTCTGTGGGGGGGGTTCAGTCCTCGTCTGTAGGTGGAGAAATGGAAACAGGTCAATTTATTTTGAAGACACTGTAAATGACAAGCTCATCTGGACATACTCCAGATCCCAACTATCAGGACGAGGCCATTTAATCAGCAACAAACTGGATTGTgcgtgtgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgagtgagtgagtgagtgagtgagtgagagagagagagagactgggccGATGAAGACCGCATTACCAAGATATGACAGAGACAAATACTGACAGAAAAAGGAAGGAGTTGAACAGAACAAAGGAAGTGGGTGAATCTCTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26503 lncRNA downstream 54264 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 254987 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 307971 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 365761 25355522 ~ 25355732 (-) True G19399
TU26429 lncRNA downstream 624035 25097219 ~ 25097458 (-) True G19383
TU26638 lncRNA upstream 347809 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 393122 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 437559 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 565384 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 576622 26307737 ~ 26310671 (-) True G19660
XM_039790404.1 mRNA downstream 10078 25708792 ~ 25711415 (-) True dnaaf1
XM_039790509.1 mRNA downstream 21955 25639979 ~ 25699538 (-) True megf6
XM_039822720.1 mRNA downstream 670720 25042764 ~ 25050773 (-) True LOC120573181
XM_039822705.1 mRNA downstream 763308 24950375 ~ 24958185 (-) False slitrk3a
XM_039822696.1 mRNA downstream 763323 24950375 ~ 24958170 (-) True slitrk3a
XM_039790567.1 mRNA upstream 7375 25738490 ~ 25741735 (-) True slc19a3a
XM_039790575.1 mRNA upstream 7375 25738490 ~ 25741133 (-) False slc19a3a
XM_039822503.1 mRNA upstream 11391 25742506 ~ 25747180 (-) True slc19a3b
XM_039781734.1 mRNA upstream 25188 25756303 ~ 25889552 (-) False LOC120546637
XM_039781743.1 mRNA upstream 25188 25756303 ~ 25889552 (-) False LOC120546637
TU26301 other downstream 1468580 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 1893539 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 1962667 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2469073 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2572978 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 575949 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 589825 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 589827 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 589827 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 703166 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile