RNA id: TU26638



Basic Information


Item Value
RNA id TU26638
length 276
lncRNA type sense_over
GC content 0.52
exon number 3
gene id trip12
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26041295 ~ 26089702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCAGAGAGCATGAAGAGTCAAGAGACCTGCTGTGGGTTGGGACATTACTTGAACTCAACTGTCAGgTGATGTTGCTTTTGGTTGGGTGAAAACACAGGTCTGATCCTCATCGCTGACAGTAGCAGGGAGCCTGAAAGGGCAGTCAGACAGGCCTCCGTTGTCATGGCAACATGCTATGGCGCAGCACTTATTGGGTATTCAACTGGATGGCAAGTAACTGTTAGCTGTCCGGGTATTCGGCCCCCTCTCTCCCACAAACATCCTGTCCTCTCTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU26546 lncRNA downstream 347809 25721493 ~ 25731115 (-) True G19466
TU26503 lncRNA downstream 411695 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 612418 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 665402 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 723192 25355522 ~ 25355732 (-) True G19399
TU26656 lncRNA upstream 34535 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 78972 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 206797 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 218035 26307737 ~ 26310671 (-) True G19660
TU26805 lncRNA upstream 221915 26311617 ~ 26412574 (-) False G19665
XM_039783999.1 mRNA downstream 7061 26041614 ~ 26071863 (-) False trip12
XM_039783991.1 mRNA downstream 7061 26041614 ~ 26071863 (-) False trip12
XM_039783981.1 mRNA downstream 7061 26041614 ~ 26071863 (-) False trip12
XM_039783965.1 mRNA downstream 7061 26041614 ~ 26071863 (-) False trip12
XM_039783973.1 mRNA downstream 7061 26041614 ~ 26071863 (-) False trip12
XM_039821385.1 mRNA upstream 46112 26135814 ~ 26156545 (-) False LOC120572189
XM_039821375.1 mRNA upstream 46112 26135814 ~ 26156545 (-) True LOC120572189
XM_039778380.1 mRNA upstream 153179 26242881 ~ 26259016 (-) False baz1b
XM_039778369.1 mRNA upstream 153179 26242881 ~ 26259016 (-) True baz1b
XM_039778394.1 mRNA upstream 169744 26259446 ~ 26261795 (-) True bcl7bb
TU26301 other downstream 1826011 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 2250970 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 2320098 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2826504 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2930409 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 217362 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 231238 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 231240 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 231240 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 344579 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile