RNA id: XM_039783956.1


Basic Information

Item Value
RNA id XM_039783956.1
length 6502
RNA type mRNA
GC content 0.52
exon number 41
gene id trip12
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26041295 ~ 26089702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCCAACCGGCCTAATTCCAATCCAGGGGGGTCACTGCGCCGTTCACAGAGGAACACTGCTGCGGCCCAGCCACAAGACCACACAGTCGCAGGAAGGTTGCAGTCAGAGCAAGTCAAACATAAAGCAAATTCCCCACCTGAAAGTAGAAGACCTAATTCTAAGGCTTCCAAAGCCACAGCCAGCTCAGCCACTGGTCAGTCCAGAGGGCACAGCTCAAGAAGCAGAAGCGGTCTTACTCTGTCCGTGGCTTCATTTGTGTTGCAAGACGAGCCAGAGGCTGCAGGGACATCTGAACAAGAGCGACCAGGCCACCAGTCAAAGAGTGAAGGCACCCGAGGGCTGAAGCGAAGCGAAGCTCCTGACCAAATTAGTACCTTCGGACCGACCCCTGCCAAGAAGCCCAAATCGCTCCCACCACCCAGAGACAATACCTCAGAGACCAAGAAAGGCCCAGCTAAGTCCAAGAAGAGATCACTTGCTTCAGAACCACCTGCATCGTCAGGTCGAGGCCAGAGCAAGAAGAGCGGGGCCGCTGGGGCCTCACCAATTCCGAAACGGAAAAAAGCGGACTCCCTCCCCGGTCTAAGCAGCACCGCTGGGTCCCTCCCCAATCGTACCGAGGGCAGAACTGCAAAACCCACCAAGCTGGCGTCTAAATCGGCCGCCTCAGCCAAAGCTGGGTGTAGCAACGTGACggactcctcctcttcctctgcctccacctcttcctcttcctccaccacAGGCACCAACAGCGCCACCACGCAGGGCGCCCGAGTTAAACAGGGAAAAGATCAGACCAAGGCACGACGCTCTCGCTCAGCCTCAAGCCCTTCTCCCCGTCGTAGTACCCGTGACAAGGAGCAGGCCAAAACAGCCAGCTCTTCAAAGTTTGAGTGGGCAGCACGCTTCAACCCCAAAGTCAACCTGCCAAAACCCAAACTTTCCTTGCCCGGATCCTCCAAAACTGAGACCTCCAAACCTGGGCCATCAGGATTACAAGCTAAACTAGCAAGTTTGAGGAAATCCACTAAGAAGCGCAGCGAGTCTCCTCCAGCAGAGCTCCCCAGCTTTCGGCGGAGCACACGCCAGAAGACCACGGGCTCCTGTGCCAGCACCAGTCGGCGGGGCTCAGGCCTGGGCAAGCGCGGGGCAGCCGACGCTCGCCGACAGGAGAAAATGGCCGACTCTGACAACAACCAGGATGGGGCCAACTCGTCAGCCGCTCGCACTGATGAGGCATCACAAGGGGCTTCAGCTTCAAGCTCGGTTGCTGGAGCTGTGGGCATGACCACCTCTGGAGAGAGCGAGTCTGATGACTCTGAAATGGGAAGGCTTCAAGCCCTACTGGAGGCCAGGGGTCTCCCCCCACATCTTTTTGGGCCCCTCGGACCCCGCATGTCACAGCTGTTTCACAGGACTATCGGCAGTGGAGCGAGCTCCAAGGCTCAGCAGCTACTACAGGGCCTGCAGGCCACAGGTGATGAGTCTCAGCAGCTCCAAGCTGCGATTGAGATGTGCCAGCTGCTGGTGATGGGCAATGAGGAAACACTTGGAGGATTCCCTGTCAAGAGTGTGGTGCCCGCTTTGATTACACTGTTACAAATGGAGCATAACTTTGATATTATGAATCATGCCTCTCGTGCACTCACATATATGATGGAGGCACTCCCTCGATCCTCTGCTGTGGTGGTCGATGCTATTCCTGTCTTCCTGGAGAAGCTTCAGGTGATCCAGTTCATTGACGTAGCAGAGCAGGCCCTGACTGCCCTGGAGATGTTGTCAAGGCGACACAGCAAAGCCATTTTGCAGGCTGGTGGGCTTGCTGACTGCCTCCTCTACCTAGAGTTCTTTAGCATCAATGCTCAGAGGAATGCCTTGGCCATTGCAGCCAACTGCTGCCAGAGCATTACTCCGGATGAGTTCCACTTTGTTGCTGATTCTCTGCCACTGTTGACTCAGAGACTCACACATCAGGATAAAAAGTCAGTCGAAAGCACATGCCTCTGTTTCGCCAGATTGGTAGACAACTTTCAACATGAGGAGAACCTGCTGCAGGAGGTGGCGTCACGGGACCTGTTGACCAACATTCAGCAGCTGCTGGTAGTGACCCCTCCTGTTCTCAGCTCGGGGATGTTTATCATGGTTGTGCGCATGTTTTCCCTGATGTGCTCAAACTGCCCCTGCCTGGCAGTCCAGCTTATGAAACAGaACATAGCAGAAACTCTGCGTTTCCTCTTGTGTGGTGCATCAAATGGCAGCTGCCAGGAGCAGATTGAACTGGTACCCCGGAGCCCCCAGGAGCTCTATGAACTGACCTCCCTCATATGCGAGCTGATGCCCTGCCTGCCTAGAGAGGGCATCTTTGCAGTTGATGTAATGCTGAAAAAGGGCAGTGCCCAGACGACAGAGGGAGCGATCTGGCAGTGGAGGGATGACCGGGGACTGTGGCATCCTTACAACCGCATTGACAGCCGCATCATTGAGACAGCACACCAGAACGGGGAGGATGAGATCAGCTTGTCAACCCTGGGCCGTGTGTACACAATTGACTTTAACTCTATGCAGCAGATAAATGAAGACACAGGAACTGCACGTGGTATCCAGAGGAAACCAAATCCTCTTGCCAACCCTAATACAGGGAGTCACCAGGAGGTTCGTCGAGAAGATGCACGAGCTCAGTTGATGAAGGAGGACCCAGAGCTGGCAAAATGCTTTATCAAAACTCTGTTTGGGGTCTTGTATGAAGTGTACAGCTCATCGGCCGGCCCTGCTGTCAGACACAAGTGCCTTAGAGCCATCCTCAGGATCATCTACTTTGCTGATGCAGAGCTACTGAAGGATGTGCTGAGGAACCATGCTGTGTCCAGTCACATTGCCTCAATGCTATCCAGCCAGGACCTAAAGATTGTAGTGGGTTCTCTGCAGATGGCTGAGATCCTCATGCAGAAGCTGCCTGATGTTTTCAGTGTCTATTTCAGAAGAGAAGGTGTGATGCACCAGGTAAAGAATCTGTCAGAGTCTGAGAGCTTTCTAGTCACTAGTCCACCAAAGGCTTGCCCTAGTGGCACTGCCAGTTTGTGCACTACCACCATCAGCACTGCATCCACCACATCTGCTAATAATGCAACTCCTGAGCTGGGCTCACCCAGCTTCCAGCACAGCATGGACGACTCACTGGACCTCAGTCCACAGGGGCGGTTAAGTGATGTCTTAAAGAGGAAACGGCTACCTAAAAGAGGGCCCAGAAGGCCCAAATACTCTCCCCCAAGAGATGATGATAAAGTAGACAATCAAgCCAAGAGCCCTACCAGTACTCAGTCACCCAAATCATCCTTCTTGGCCAGTCTTAATCCTAAAACCTGGGGCAAGCTGGGTGCTCAGACCAACAATGCCAACTCGGAGCCCTCACGCACAGCGGGGGTGAGTGGCCTGGCAAGGGCACCTCCCAAGGACTCAATTTCAAATAACAGAGACAAAATTAAAGCCTGGATCAAAGAACAGGCAAGTAAGTTTGTGGAGCGCTACTTCAACTCTGAAAATGTGGATGGCAGCAACCCTGCACTGAATGTACTCCAGAGACTTTGCAcagccactgagcagctcaACCTGCAGGTGGATGGTGGTATGGAGTGCCTGGTGGAGATCTCCAGTATTGTATCGGAGTCTGACGTGTCGTCTTTTGAGATCCAGCACAGTGGGCTGGTGAAGCAGCTCCTGGTCTACCTGACCTCCAACACCGACAGGGACTTGCTCAGCCGCGACGTGCGGCTCAAAAGGTTCCTTCATGTGTTCGCTGGCTGTCCGGTCCCAGGAATGGAGCCTGTAAGTCGTCTGGACCCAACAGAGAATGGTCCGTACCTGGCACTGGTGCATAAAATGAACAGCTGTCTGAGCCAAATGGAGCAGTTTCCTGTCAAAGTGCACGATTTCCCCAGTGGCAACGGCAATGGCAGCAGGGGTTCTCAGGCACTGAAATTCTTCAACACACATCAGCTCAAGTGTCAGCTGCAGAGACACCCAGATTGCACTAATGTTAAACAGTGGAAAGGCGGCCCTGTGAAGATAGACCCCCTGGCCCTGGTGCAAGCCATTGAAAGATATCTTGTTGTCAGAGggTACGGCCGAATCAGAGAAGAGGATGAAGACAGTGATGACGACGGTTCAGATGATGAAATCGATGAATCACTGGCAGCACAGTTCCTGAACTCTGGCAGTGTACGTCACAGACTACAGTTCTACATTGGTGACCACCTGCTACCATACAACATGactgtataccaggctgtacgGCAGTACAGTCTTCAGGCAGAAGAAGAAAGGGAGTCTACGGACGATGAGGCAAACCCACTTGGGCGAGCTGGCATCTGGACCAAAACTCACACAATATGGTATAAGCCtgtgagagaggaagaggatggCAGCAAAGATGCTGTGGGTGGAAAGCGGGGCCGAGCCCAGACAGCTCCCACCAAAACCTCACCTCGCAACGCCAAGAAGCAGGATGAGCTGTGGCATGATGGTGTATGTCCCAGTGTCCTCAATCCCTTAGAGACGTACCTCACTTCGGAGCCACCAGAGACCATAACCTTTGATGACCCCTCTTTAGAGGTCAACTTGCTGCTGAGGGTCCTGCACTCCATCAGTAGATACTGGTTCTACTTGTATGATAATGCTGTGTGTAAGGAAATCATCCCTACCAGTGAGTTCATTAACAGTAAGCTGACAGCCAAAGCTAACCGTCAGCTACAAGACCCACTGGTCATCATGACGGGGAACATCCCTACTTGGCTCATTGAGCTCGGAAAGACATGtCCTTTCTTCTTCCCCTTTGACACCCGGCAGATGCTATTCTATGTAACTGCCTTTGATCGCGACAGAGCCATGCAACGCCTACTGGACACAAACCCTGagatcaaccaatcagattctCAGGACAGCAGAGTTGCACCGCGTCTTGACAGGAAGAAGAGGACGATAAACCGCGACGAGCTGCTAAAACAGGCCGAGTCTGTGATGCAGGACCTCGGCAGCTCCAGGGCAATGTTAGAGATTCAGTATGAGAACGAGGTTGGCACAGGTCTTGGCCCCACTCTGGAGTTCTACGCTCTGGTGTCTCAGGAGCTCCAGCGGGCTGATCTTGGCCTGTGGAGGGGCGAAGAGGTCACGTTGGCCAATCCTAAAGGTAGCCAAGAGGCAACTAAGTACATGTTCAGCTCCAGGGGACTGTTTGCTGTTCCCTTCGGCAGGACAACCAAACCAGCACACATAGCCAAAATCAAAATGAAGTTCCGTTTCTTAGGAAAGCTGATGGCGAAAGCCATCATGGACTTCAGATTGCTGGACCTACCGCTGGGGCTGCCATTTTATAAGTGGATGCTACGGCATGAGATGTCTATAAGCTCCCATGACCTGGTGAACATTGACCCCGGTGTGGCAAAGTCCATCCAGCACTTGGAGGATGTTATCCGCCAGAAAAAGAGGCTGGAACAGGACAGATCACAGACGAGGGAGACCCTACAGCAGGCACTGGAGAGCCTGAACATGAACGGCTGCTCAGTGGAGGACCTGGGTTTGGACTTCACCCTTCCAGGATACCCCAACATTGAGCTGAAAAAGGGCGGCAAAGACTTTGCAGTCACGATCTACAACTTGGAGGAGTACCTCAGGTTGGTGGTGTACTGGACTCTAAATGAAGGAGTTTCCAGACAATTTGAGTCATTTAGGGAGGGGTTTGAGTCAGTCTTCCCCTTGCATCACCTGCAGTATTTCTATCCAGAGGAGCTGGACCAGTTGCTGTGTGGTAGTAAATCAGAGACATGGGACGTAAAGACGCTGATGGAGTGCTGTCGACCGGACCACGGCTACACACATGACAGCCGCGCAGTACGGTTCCTGTTTGAGGTGTTGAGCAGCTTTGATGCCGAGCAGCAGAGACTTTTTCTGCAGTTTGTCACAGGAAGCCCCAGACTGCCTGTTGGTGGTTTTCGGAGCCTGAATCCCCCTCTGACGATTGTGAGGAAGACTTTCGAGTCAACAGAGAACCCGGATGACTTCCTCCCCTCAGTTATGACCTGTGTCAACTACCTGAAGCTGCCTGACTACTCCAGCATAGAGATAATGCGAGAGAAACTGTTGATTGCGGCCCGCGAGGGCCAGCAGTCTTTCCACCTTTCCTGATCTCTCCACATCTCACATTCAAATGCCTTCTACAGCGACTGATGAAATCATGACTTCCTTCTTAGTTTTTTTGTAACCACATACATTAAGGCTACATGTACAGCCTTCTTGTTAGAGAAAGCAGCTTGCAGAAAAATTAAGactctaaatatatatttgctgCCCCAgtctctcaaaaaaaaaaaaatattaaaaacaaaaatggaaaAGTGTTCCATGACTCACAgaacttaaaatataaaaaaagagagagtaaAACTTATATCAGTAGTTgagtaatgttaaaaaaaaaaagaaaaaaaaaagatgaaaacatcTG

Function

GO: NA

KEGG:

id description
K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26546 lncRNA downstream 310180 25721493 ~ 25731115 (-) True G19466
TU26503 lncRNA downstream 374066 25622986 ~ 25667229 (-) True G19438
TU26464 lncRNA downstream 574789 25430426 ~ 25466506 (-) True G19412
TU26447 lncRNA downstream 627773 25413195 ~ 25413522 (-) True G19401
TU26445 lncRNA downstream 685563 25355522 ~ 25355732 (-) True G19399
TU26638 lncRNA upstream 10337 26078924 ~ 26089702 (-) False trip12
TU26656 lncRNA upstream 55650 26124237 ~ 26128420 (-) True G19551
TU26673 lncRNA upstream 100087 26168674 ~ 26170568 (-) True G19566
TU26800 lncRNA upstream 227912 26296499 ~ 26300091 (-) True G19663
TU26797 lncRNA upstream 239150 26307737 ~ 26310671 (-) True G19660
XM_039790621.1 mRNA downstream 2737 25986594 ~ 26038558 (-) True dner
XM_039786667.1 mRNA downstream 59080 25950551 ~ 25982215 (-) True pid1
XM_039781770.1 mRNA downstream 226820 25756303 ~ 25814475 (-) False LOC120546637
XM_039821385.1 mRNA upstream 67227 26135814 ~ 26156545 (-) False LOC120572189
XM_039821375.1 mRNA upstream 67227 26135814 ~ 26156545 (-) True LOC120572189
XM_039778380.1 mRNA upstream 174294 26242881 ~ 26259016 (-) False baz1b
XM_039778369.1 mRNA upstream 174294 26242881 ~ 26259016 (-) True baz1b
XM_039778394.1 mRNA upstream 190859 26259446 ~ 26261795 (-) True bcl7bb
TU26301 other downstream 1788382 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 2213341 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 2282469 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 2788875 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 2892780 23139400 ~ 23148515 (-) False G18885
XR_005641049.1 other upstream 238477 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 252353 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 252355 26320942 ~ 26334687 (-) False LOC120570356
TU26818 other upstream 252355 26320942 ~ 26334687 (-) False LOC120570356
XR_005641066.1 other upstream 365694 26434281 ~ 26445935 (-) False LOC120570434

Expression Profile