RNA id: TU26817


Basic Information

Item Value
RNA id TU26817
length 3439
RNA type TUCP
GC content 0.46
exon number 5
gene id LOC120570356
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 26307064 ~ 26334719 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCGTCAAAACATTGCGTCTCTGCAGGACTTGCCAGGGCCGAGAGAAAAGGAACATTTTCCTGGGAAGGAATGCGAAAGGGGGTTTAGGATTGGCACTGCCAAGAAGAAAACGAGGAGGTGCGACATTTTCTAAGATACGTGGAGatccgttttttttcttcccttcaAAGGTGTTCACCTCCCAACCCACCGCCCACCACGGCCCTCACCTGTGTGTTGCGGTGCTTCCCTTGTGAGCCGACCTGGGCTGGCAGTCCCTTCTTGCACCGCCCGCCGACTCCGCCCATGGTCAGAATGACGCGCTCCAAGACCTTCCAGGCGTACCTGCCAAGCTGCCACCGAACGTACAGCTGCATCCACTGCCGAGCTCATCTGGCCAACCACGACGAGCTCATCTCCAAGTCCTTCCAGGGCAGCCAAGGCAGAGCCTACCTGTTCAACTCAGTggtgAACGTCGGGTGTGGCCCTGCAGAGGAGAGAGTTCTGCTCACAGGCCTGCATGCTGTCGCAGATATCTACTGTGAGAACTGCAAGACCACCCTGGGCTGGAAATACGAACATGCCTTTGAGAGCAGTCAGAAGTATAAAGAGGGCAAGTTCATCATCGAGCTGGCCCACATGATCAAGGACAACGGCTGGGACTGAGGGACAAGCAGCTGGGACACGACCAcagcagaggagagggaggggggagggggctgGATGGACAAATGGATGGGAGAGATGGGGGTCGTGTGTGGTGGGTGAGTGTGTGACTTTGGTTTGGCTGATTTACAATTAACCCTGTGTTAACTCTCTGCCCATCCCTCCCTACCACGCCTCttgatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacaaacacacagacacacacattcatcaaGGTCCCAGACATCCCAGcttgacagagagacagactagGCAGGCTTTTGCACAGCTAGCAGGTCTAGATGACTGGCCAGCAAGATGTctcattttcacatttaaaaaaacatgatttgatAGCTCATTCAGAGGGTAGCAACACTCCCTCTATACCTGCTAGAAGACATCTTCATTGTGTGAAGTATTCCACCTTGTCTAACAATAATGATTAAGCCAGTTGTATACGGGTCATTCAGTGGAAATTTAGCCAGAAGGAAGGCAGTTAGGCCGGCCTGGCGGGTTTCATTGGCCTTGGTTGAAGAGCTGACGGGCATTCTCTCTGTCCACAGCTTGAATCAGATGACCTAAGATGATTATAGCAAATCCAGCTGATCGGGGCCATGCCAGCTGGGCCAGTGATGAGGCCTGGCTCTGAGGCTTGGCACAGAGGCCTGAGCACATGGGTGTTGGGTTGTGGCGCAGGGCTGGGGTGATTGCGGGGATTGCCGCCCACCAGGCCGCTCTCTCAACATGGTGGGGAGGGGAAAATCCTGATCCAGTTATGCAGTGGCATTGATGGCTTCTGGCTGGGATTCACTCCATGTCTTGCCAGTGATGCAGCTCATGACGGGccaagagtgaaagagatacagacagacaaccACCGGCTTGTCCTAAAACCTCACAGGAATTTGCCCTCGCAGCAGCAAAGCAGCTCCCCTTGGTTAATACAACAAGTCGTGTATAGGGATCTGCTGATACTTCCCGTGTATGTTTGGTGTCatcagatgcatcgttgcatccACCTTTGTTACTTGGCCAGGTAGAATTACACAATATAAGCGTGTCTCAGGTGAACAACTTTGGCTGGGATTCCCAAAGGTTTGCAAGCACTGTGAACATCTTTCTGCTGTTGGAGGTGGATGAACTAAGGTGACGAAGCTCTGCAGGCCTTGGGAAGGCTGGGGGCGGCTAGTGATCAGTGAGATACAAACACAACCCCTGCTGATCAGTGAGATACAAACACAACCCCTGCTATCATGCAAATAACAGTGTGATTTGTGGCCGGACTGCATTTACTGGTTTCATGGGCCAAGGGAAAATGCAAATAGTAAAGAAATTCACACGGAAAGTAAATGATTACTTTCACTGAAGTTACGAGGTATATACATACCACAGCGGTGTGTACTGTAGAtgaatatgtttaaaatgtatcaCTCTTAGGCTCTCTTTCAGTCTGGGATGACTGCTGTTTAACTGCTGTTACACTGATCTTCACTAACTGGCCCTCATGAAACATTATAACAAAAACTACTGGACAACATTATAAAGAAATGCACTAGATAGACCAACTTGCCTATTCTTTTGTTCCTTAATGCACCAACACATTATCTTTTTAGGTTTtgcccaagtttttttttttttttcagttagctAAAATATTCCTAATGCATCATGGGCCTTTGATTTATGACACCTGGGTAATATTTGAGGTAACATTAATGGGAAGCATTGCTCAGGTACTTTCATTCTACCTTTTCTTTGCTAAGGCCAGAATCCTACTTAATGTGCTGGATGTGTTATTATTCTCTGATGGAAATGTATTATTTTCAAATGAGAGAATCCATCCCATGGATATGCAACATGAATGCATGCATGAAGTAAAACAAGTGTTCTGACCAGTTTTGTGCTCGGTCCTCATCACATTTTTGTGAAAAGAACATTTTGTGTATACTAGAGTTGCAATGAAACCTTGTGCTGTAATACAACATCTAATCAGTTTCACCCCAGTTCATTTAAGCTGCGAGATCCGTCTTCTTTAGATTAAATGTGATCATGGTTTAGAAAAGTCAAATTAGCTGCACCGTTTGTCACACAGTTTCCCGTTGTTGCGAACATTGCTCTAGATGTTGCCCTGTATATGGTGAGTGCTGTTCAAGACTCTCCAGTTACAAccaaacctaaacagataactCTCTTCAGTAACACTCAGCAAGTGACTGCTGAGTTGGAGGCTGCGACATTAAACCCAGCACAACCAAAGAACCCACTCGTCAACAATAAATTGACCAAACAAAAGATCCAATTTTGCTTTGTCAAGTGTTGCAAAACAAGAGGATGTGTACAGCTGAAAGCCAAGGTTGTGGATAGCCTTTCTCTGTGATATATATAATGCATTATGATTTTGTAAACATAAGATcttaatatatgaatatattatatttactgtattcacCACGAGGATTACCATTCATGTCAACCTCTGTGTTACAGACTGTAAATAGTGTTAATGTATTGTGTTTTATCTATGATCCATACAGCGATTAATGAATATGATTTAGGTCATGTCATGCTTTCTCTCTGGTACCCCACATTGGCTGTACGATACTACTTTTTTACTGAAAATGTTTCAATTTTAATGTCTTTTGTAAAGGAGGATGCTGATGTTGACTATATATCATTGGATCTTCATCTAATAAAATGCACCTTGATATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26797 lncRNA downstream 10271 26307737 ~ 26310671 (-) True G19660
TU26800 lncRNA downstream 20851 26296499 ~ 26300091 (-) True G19663
TU26673 lncRNA downstream 150374 26168674 ~ 26170568 (-) True G19566
TU26656 lncRNA downstream 192522 26124237 ~ 26128420 (-) True G19551
TU26638 lncRNA downstream 231240 26078924 ~ 26089702 (-) False trip12
TU26806 lncRNA upstream 66762 26401449 ~ 26412574 (-) True G19665
TU26807 lncRNA upstream 66762 26401449 ~ 26412574 (-) False G19665
TU26835 lncRNA upstream 72601 26407288 ~ 26408748 (-) True G19685
TU26810 lncRNA upstream 116701 26451388 ~ 26453733 (-) False cul3b
TU26811 lncRNA upstream 116736 26451423 ~ 26453733 (-) False cul3b
XM_039778394.1 mRNA downstream 59147 26259446 ~ 26261795 (-) True bcl7bb
XM_039778380.1 mRNA downstream 61926 26242881 ~ 26259016 (-) False baz1b
XM_039778369.1 mRNA downstream 61926 26242881 ~ 26259016 (-) True baz1b
XM_039821385.1 mRNA downstream 164397 26135814 ~ 26156545 (-) False LOC120572189
XM_039785444.1 mRNA upstream 2864 26337551 ~ 26348184 (-) False gdpd1
XM_039785438.1 mRNA upstream 2864 26337551 ~ 26348124 (-) False gdpd1
XM_039785434.1 mRNA upstream 2864 26337551 ~ 26348099 (-) True gdpd1
XM_039818797.1 mRNA upstream 99594 26434281 ~ 26445935 (-) False LOC120570434
XM_039818786.1 mRNA upstream 99594 26434281 ~ 26445935 (-) True LOC120570434
TU26301 other downstream 2068029 24248031 ~ 24252913 (-) True G19270
TU26143 other downstream 2492988 23823821 ~ 23827954 (-) True G19140
XR_005641870.1 other downstream 2562116 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 3068522 23246603 ~ 23252420 (-) True G18948
TU25813 other downstream 3172427 23139400 ~ 23148515 (-) False G18885
XR_005641066.1 other upstream 99594 26434281 ~ 26445935 (-) False LOC120570434
TU27044 other upstream 753919 27088606 ~ 27089064 (-) True G19840
unassigned_transcript_98 other upstream 1731638 28066325 ~ 28066397 (-) True trnam-cau_1
unassigned_transcript_100 other upstream 1815893 28150580 ~ 28150652 (-) True trnar-acg
TU27758 other upstream 3112483 29447170 ~ 29448655 (-) True G20417

Expression Profile