RNA id: TU27147


Basic Information

Item Value
RNA id TU27147
length 353
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G19916
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27510793 ~ 27539558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagacagaggagaagaaGCATGGGAACGGGagtgagaggaagagaaaaacaaagagtTCATAGAGAACAGCAAGGCAAGGGAAAACAGTGAAataagaagagaggaaagaggagaaagcTGAGGAAAGCGTGCAGGGAAaagtggaggagaggagaaatgaGAGTCAGGAGCAGCAGAGGAAAAACgtgaaaggaaagagaaaattaAGAAAGGACGGCTATACTGAGAAGGAAGCACACACAGGAGAGTGAAGAAGAGACAAAAGAGCAAATCCATGCACTTTTAGTGAGGTAACACTGACCTTCCTGAGGAATTGGAGCCAAGAAGATGAACTTTCACAGACAGCATGG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27145 lncRNA downstream 24316 27486185 ~ 27486477 (-) True G19915
TU27143 lncRNA downstream 104247 27405393 ~ 27406546 (-) True G19913
TU27081 lncRNA downstream 283304 27227251 ~ 27227489 (-) True G19876
TU27079 lncRNA downstream 292603 27217742 ~ 27218190 (-) True G19874
TU27056 lncRNA downstream 388386 27121771 ~ 27122407 (-) True G19851
TU27199 lncRNA upstream 203657 27743215 ~ 27743465 (-) True G19963
TU27205 lncRNA upstream 205727 27745285 ~ 27745574 (-) True G19967
TU27257 lncRNA upstream 229943 27769501 ~ 27771897 (-) True G20012
TU27264 lncRNA upstream 285127 27824685 ~ 27834201 (-) False cwf19l2
TU27271 lncRNA upstream 329036 27868594 ~ 27913558 (-) True G20019
XM_039792203.1 mRNA downstream 30727 27407761 ~ 27480066 (-) False pdgfd
XM_039792196.1 mRNA downstream 30727 27407761 ~ 27480066 (-) True pdgfd
XM_039791741.1 mRNA downstream 253797 27247233 ~ 27256996 (-) True LOC120553392
XM_039785702.1 mRNA downstream 340415 27160443 ~ 27170378 (-) True fzd4
XM_039791205.1 mRNA downstream 538227 26966344 ~ 26972566 (-) True tyr
XM_039786298.1 mRNA upstream 185876 27725434 ~ 27731504 (-) False msantd4
XM_039786287.1 mRNA upstream 185876 27725434 ~ 27731472 (-) False msantd4
XM_039786270.1 mRNA upstream 185876 27725434 ~ 27731469 (-) False msantd4
XM_039786279.1 mRNA upstream 185876 27725434 ~ 27731387 (-) True msantd4
XM_039781709.1 mRNA upstream 232410 27771968 ~ 27820113 (-) True gucy1a2
TU27044 other downstream 421729 27088606 ~ 27089064 (-) True G19840
XR_005641066.1 other downstream 1064858 26434281 ~ 26445935 (-) False LOC120570434
XR_005641048.1 other downstream 1176074 26320940 ~ 26334719 (-) False LOC120570356
unassigned_transcript_98 other upstream 526767 28066325 ~ 28066397 (-) True trnam-cau_1
unassigned_transcript_100 other upstream 611022 28150580 ~ 28150652 (-) True trnar-acg
TU27758 other upstream 1907612 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_101 other upstream 1973091 29512649 ~ 29512720 (-) True trnaw-cca
TU27977 other upstream 2428235 29967793 ~ 29972330 (-) False im:7138535

Expression Profile