RNA id: TU27313


Basic Information

Item Value
RNA id TU27313
length 3357
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G20049
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 27984269 ~ 28006577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGAACTGATTTAATTACAAAGAGGAACCTACAGTGACAAAACGAGTACAACTACATACAGTAACTCTGATAGACTGTAACCATGACAACTGCAACCAGATCCAGAGATAAACAGAGTTGGGACCAGGTTGTTTTTCCTTCCTGTATAGATTTCCGTAACAAGGCAAAGATACATTTCCGAGCTAATATGGCTACCAGTAAAAACATCAATGCCAAAACTCTACCTTTAAGTCACCCTGGTGGCCATCTTTCTTTTGGAAAGATCTATGACAGTTATAATTTAAACGTCACTGACAGCGCATGCCAGAGAGGAGAAGGgggaaaaatacaaacaaaaacaaaccttacacaaatatataaaaatatgccATAAGATTCATATCAACAATTGAGGACCATGTGGGTGCACTATTTACAGAAAAAGGCAATATATACCAATATTTACAACAATAAAGACTTCTTTCACATACGGGCATGAGGACGTGACTTACAAGTCTGCTGCGTATTACAGTGATGGTAGAATGAGTTTGATGTGATGGCAAAAATTAAGTGTAAATCTTCAACATGCGTCATTCTCTCAATCTGGGTCAAATTAGCATCACGTTTTTAAATCCAAGACAcagcgtgtttgtgtgcatgcttgtATGTCCGTAAAATGAAAAGAGTCTAAGTCAACCCACTGGGCTCAAAACCTAAAATGCACCTGCTGAAAATATAATTACTCAGTCAATCATTCTTATGAAACTACCAAGGAAACATAAAAGTATATTCTCAAGGCAAATATTTTTCTGATTTGAAAGAAAATCTACAAACTTTCTCAATGGGCTGAATTGAAAGTTACCGACTACAACCATGGTAGCGGTTTCAGCCCAGAAAACTAAGAAAATTAATTAATACACTAGAGATTCAGTGAAGTGGGGACCCACCATGGAGGGGCTGCTACCCTTTTTTGCTGCCCAACTCACAGTTTTAGAAACGATGCTCCAAAGGCGCTGGCACTCAGATGTTCCTCCCCTCAATTTCTCACAGAAAACATACTAACTCCATTTTGCAGGGAGCTCTTCATTACTCTAAAGCCAGCATAGATATACAGCATTTTCATGGGTGACTTGTCAGGTCTTGGCACAAGAACACAAATATTAATTTTGTTGTCAATCAtacagaacataaaaaaaacacttatatCTGCTACCTTAACTTTAGAAGACGGTAAAGGAATAATTGAACATTATGGGAAATAATGGTATTAACTTTTTTGctcagagttagataagaagattaATCATGCCTTATCTTATTTGTTGTGAGATTACAAAAACCAAAATGTACACAAAAATGGCACGCTGTAGTCTTACACTTTTTTATATGGAATAAGTAAACAAGAGGTTTATTTTTGTACCTTTGGAACAAGCCAGTCTAGCCATTTCCCTGTTTCCAGTGtttatgctatgctaagctaagctaaatgGCTTCTGGCTGTAGTTTAatatttaccgtacagacatgagagtggtgtcAATCTTTTTCGACCGGAGTCTCAACAGGAAGCCGAATAAGCAGCTTTTCTTAAAATGTTGAATTAGTCCTATAACATCTGCTAAAATTCTAAAACTATTCTCTGCTGTATTCTTCACATGCTACCACAAGCTAACTGTAATTTTGCCTCATAGTGGGCAGAAAATCACAAACAACGTCCTTTTAAAATCTTTCAACTGATTAACGGAGCActtggaggacacacacacacacacacacacacacacacacaTGCATTTTGTTCTCCAACAATCAATACTGAAATCAGTGTTTGTGCATTAGGGTGTAACAGTACATCTTAGCGCTATATTTCCTGTGACAAAAATGCCACAATATGCACTGTGGAGCTGAAAAATAGTTAAATATTTAGTAAATCTTTGCATTCGGCACCCAAACAGGCAATAGAGTGACTGTGTTGAGGAGGATCGAGCTGCGTTCAGAGACAACTTGAGGTGAATTTTGGGATCAGTTTGCAGTCTgggtagcctggttgacaccagaccctcctcagttgtaactgagagtgggtctggggaaggttcattcacagcccatttccaaaggacCAACAGACGCTGCTCAAAagcctctgggcgcattggatatTCCAACCAAtgagaccaacgatccgggtgacgtagcagtgaCAGCGgtatcaacgggttgctgcgcttcggtggtcgtcatgttgaatgtaaacaaaaagctgcttgccgtcgctgcgctatcgtcatcgtgtaaagcccacctcaatggttgtgattggtgccttgatttagaaaaattggaaatgggtttgaatgagCTCTTGGCCGGAcagacttgcagagcaaatctcaaatttgccggaagttcgccAGGGGTTTCCCAGGCTACAGTCTGGTTCTTTTGGCCACAAACAGCCAATAAATGAGTAGAGACAAAAATATTTCCAGACCCTCTCCTTTCTGGATTTGTTTCCCTACATTTAGGGAGTTACACAACTCCGAAACAAAAACCCTGTATTGTGCATCGTACCGAACCATGACTGAACTGCATCGTTACACCCCtgctgtgtatgtctgtgtgccaGAACCAAACCATACCCATTTATCTATTCTGCTAATCAAGCCAGGGCCTCCATGTTCTtcaattcaaaaacaaaaagtgaaagCTAAATCGTCTATAAATTAAGTGCTGTAAAAGAAGGCGGTAAAATCAAAAccataaatactgtacataactGTCGTTATCTGCTACCACAGCCTAGCGTCATAAAAGTCAGTAACACCAGCTCCTGATTTCTGCTCAACAAACTGAAAATTCATGGACAACGAATCTTTTCAGATCCCTTAATGCCAAAACTGTAACACATACAAGGCTTTGGCATAGTCATGTTAAGGAGGAACATCTCCAATCCAATTTTTTTTCTACTCAACTCCAACAAAAACTTAACAAAATCTGACACAAAGTGATTAGCTgtggaaaacacacatttatgttTCTCACCAATGTCTTCAGTGAGTGAAGGCTgtgcattaatgtgtgtgtgtgactgtgtgcatgtgcCTTGCTAGATACCCTTGCCACATATTGCACTTTAATGATATTCACTCTCCCTCTACAGGAGAAAGGATTATTTCAGCAGTCTCACATCTATAAGCAATGATCGTGGAGTAGATATTATTACAACCCTACTGCCATTAGGGGGTGTGTCTAGATGACAAGAATACTCTGTCTTTTACTCCTTTAAAAGCTCACAGATGTCAACTGAACCTCTCTTCCATGCTTGAGCTCTACTGTAGTTGCAGAAATGGATGCAAATCCAGGATATCCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27271 lncRNA downstream 89155 27868594 ~ 27913558 (-) True G20019
TU27264 lncRNA downstream 168512 27824685 ~ 27834201 (-) False cwf19l2
TU27257 lncRNA downstream 230816 27769501 ~ 27771897 (-) True G20012
TU27205 lncRNA downstream 257139 27745285 ~ 27745574 (-) True G19967
TU27199 lncRNA downstream 259248 27743215 ~ 27743465 (-) True G19963
TU27321 lncRNA upstream 464 28007041 ~ 28007474 (-) True G20056
TU27361 lncRNA upstream 103185 28109762 ~ 28114304 (-) True G20090
TU27362 lncRNA upstream 109323 28115900 ~ 28116767 (-) True G20091
TU27363 lncRNA upstream 111141 28117718 ~ 28118289 (-) True G20092
TU27364 lncRNA upstream 112632 28119209 ~ 28120499 (-) True G20093
XM_039822022.1 mRNA downstream 121899 27872415 ~ 27880814 (-) True kbtbd3
XM_039822007.1 mRNA downstream 138190 27850024 ~ 27864523 (-) True alkbh8
XM_039787706.1 mRNA downstream 155165 27824605 ~ 27847548 (-) False cwf19l2
XM_039787697.1 mRNA downstream 155165 27824605 ~ 27847548 (-) True cwf19l2
XM_039781709.1 mRNA downstream 182600 27771968 ~ 27820113 (-) True gucy1a2
XM_039822189.1 mRNA upstream 34872 28041449 ~ 28046085 (-) True p2ry2.1
XM_039822179.1 mRNA upstream 34872 28041449 ~ 28045070 (-) False p2ry2.1
XM_039822196.1 mRNA upstream 34872 28041449 ~ 28044897 (-) False p2ry2.1
XM_039785915.1 mRNA upstream 134966 28141543 ~ 28147451 (-) False yif1b
XM_039785910.1 mRNA upstream 134966 28141543 ~ 28147451 (-) False yif1b
TU27044 other downstream 913649 27088606 ~ 27089064 (-) True G19840
XR_005641066.1 other downstream 1556778 26434281 ~ 26445935 (-) False LOC120570434
XR_005641048.1 other downstream 1667994 26320940 ~ 26334719 (-) False LOC120570356
unassigned_transcript_98 other upstream 59748 28066325 ~ 28066397 (-) True trnam-cau_1
unassigned_transcript_100 other upstream 144003 28150580 ~ 28150652 (-) True trnar-acg
TU27758 other upstream 1440593 29447170 ~ 29448655 (-) True G20417
unassigned_transcript_101 other upstream 1506072 29512649 ~ 29512720 (-) True trnaw-cca
TU27977 other upstream 1961216 29967793 ~ 29972330 (-) False im:7138535

Expression Profile