RNA id: TU28994


Basic Information

Item Value
RNA id TU28994
length 1599
RNA type TUCP
GC content 0.55
exon number 6
gene id LOC120551578
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 32789644 ~ 32835807 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGTATTGGGTTAACAAATGACCAACCCGCCGCGTAGAAGAGAAGAGCGCAACATGAAATCATTCCGCTGGAGAGACGCAACTTCGCTGCCCAAAGTGGCATGAATATAGATGTTATTAGGTTTCTTCTTTtcgtttttgtgtgcgtggatcAAGCttgaagagagacagaagaaaaagaagaagagagagtgtGAGCTAATTGGGATGAGAGTTCAAGTCAAGTGAGCCGGCAGATTGGACATTTAAAGCCTCTTAACGCAGGTGGTGGGAGGAATACGGCGCGAGGGGAGTGTGTTTATGCAACGCATTGTGGGGGTTTGTGAGCATGTGTGATTCCCAGTGGTAATCCACACTGGACACAGCGTCAAGGGGGGTGATCAGGTGCGCGTTTGTGGGTCGCTGGGTGGGGGATTAATTTTAAGCGAAGACAGAGGTAGTTATGGTTTCTCTGACCTGGACGGGATGAAGTAGCTCTGTGGGAGTTTCAGGGTTTAAGACCGGAGAGGAGGAGAGCTGGGCGGACGGACGGAcgcagggagggaggaggagggggacacCACCACCGCCAAAGCTCACAACACGGTCCCCAATCCCCCATGACGCACGGATGGAGAGCACAAGAGCGCACGGGATAACTCGGCTCGAGCCTAGAAACGGGAGCGTAAAGATCACCGGGAAGCCAGACATGAGGAGTGTCCGGCACCCGGGACACCTCCACCTGATGCGGACTGTGATTTTTCTCATCGCGCTCACGATACAATCGAAGGCTGTGTGTGCAGTTGGGATGTTCGAGCTTCAGATCCATTACTTCCAGAACCCCCTCGGCCTTCTGCAGACGGGAGACTGCTGCGACCTCCAGGCCAATGGGGGGCAGCGCTGCTCTGCCAGGGACCAATGTGACACTTTCTTCCAAGCCTGCCTCAAGGAGTACCAAGCCCGGGTCATCCCAACTGGAGCCTGCACCTTTGGGTCGGGCAGCACAGGGATCCTGGGTGGAAACTCCCAGACGCTCCACCACCGAGGATatgatggaggaggaagaggaggcgtAGAGGATGGGACTAATGGACACATTGTCATTCCCTTCAAATACGCATGGCCAAAGTCCTTCTCACTGGTGTTGGAAGCTCTGGACTACGACAACGACACATCAGAATCAGGTCAGTTGATTGAGCGAGTCCTCCTCTCTTCCATGTTGAACCCTGGTGAACAGTGGCAGACGTACCGACACCACGGGCGGTCTCTCAGCCTTCATTACCGGCTTCGCTTCCGCTGTGATTCAAACTACTACGGACCTTTCTGCAACAAGTTCTGCAGGGCCCGCGATGACTTCTTCGGTCACTTCAACTGTGACCCCAGCGGCTCCAAGGTCTGCATGGAGGGCTGGACGGGGCCAGAGTGCAAAGAAGCGGTGTGTAGGCAGGGGTGTCATCAGGTCCACGGCTTCTGTACTGCACCTGCAGAATGCAAGTGTCATTATGGCTGGAAGGGCACTCTGTGTGACCAGTGTGTGACGTTCCCTGGCTGTGTGTACGGAAGCTGCACCGAGCCCTGGCAGTGTGTATGCGACGTTAACTGGGGAGGACTACTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28958 lncRNA downstream 43560 32710937 ~ 32759009 (-) False fosb
TU28965 lncRNA downstream 70578 32729470 ~ 32731991 (-) False LOC120572859
XR_005641501.1 lncRNA downstream 70584 32729379 ~ 32731985 (-) True LOC120572859
TU28826 lncRNA downstream 259650 32542525 ~ 32542919 (-) False sipa1l3
TU28837 lncRNA downstream 262277 32538565 ~ 32540292 (-) True G21184
TU29018 lncRNA upstream 150683 32986048 ~ 32991893 (-) True G21304
TU29041 lncRNA upstream 162625 32997990 ~ 32999669 (-) True G21325
TU29042 lncRNA upstream 172267 33007632 ~ 33007835 (-) True G21326
TU29043 lncRNA upstream 178127 33013492 ~ 33013695 (-) True G21327
TU29046 lncRNA upstream 182362 33017727 ~ 33018411 (-) True G21330
XM_039823530.1 mRNA downstream 17623 32765880 ~ 32784946 (-) False LOC120573640
XM_039823521.1 mRNA downstream 17623 32765880 ~ 32784946 (-) True LOC120573640
XM_039823483.1 mRNA downstream 37366 32754548 ~ 32765203 (-) False znf296
XM_039823593.1 mRNA upstream 4244 32839609 ~ 32842380 (-) True snrpa
XM_039823583.1 mRNA upstream 4244 32839609 ~ 32842325 (-) False snrpa
XM_039823544.1 mRNA upstream 14830 32850195 ~ 32869331 (-) True itpkcb
XM_039823633.1 mRNA upstream 42181 32877546 ~ 32885143 (-) True lxn
XM_039823634.1 mRNA upstream 42181 32877546 ~ 32881085 (-) False lxn
XR_005641741.1 other downstream 17623 32769121 ~ 32784946 (-) False LOC120573640
TU28481 other downstream 1214731 31582471 ~ 31587838 (-) False LOC120549585
TU28482 other downstream 1214731 31582471 ~ 31587838 (-) False LOC120549585
TU28195 other downstream 2112144 30686211 ~ 30690425 (-) False spa17
TU29117 other upstream 300527 33135892 ~ 33140131 (-) False LOC120549978
XR_005641864.1 other upstream 778064 33613429 ~ 33629268 (-) False mfsd1
TU29436 other upstream 1259197 34094562 ~ 34098341 (-) False LOC120548089
TU29485 other upstream 1646093 34481458 ~ 34482033 (-) True G21674
unassigned_transcript_104 other upstream 2211513 35046878 ~ 35046949 (-) True trnap-cgg

Expression Profile