RNA id: TU29451



Basic Information


Item Value
RNA id TU29451
length 1134
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G21640
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 34169362 ~ 34170495 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtctctctctgtcagagTTAAAAGAAATCCTTCtcccagcacctctaaatctcaCTAATctgttatattttatttgttcaaTCTGCACAAAAACTGCAGCGTAAAAACAAGTTGCAGCTTTATTccaggttgccaggcaaccagcagaAACAGGATGTCACAGCTCCTGGCTCAAAAAGTGGTAGgcacaagggggtaagcttcgcttcagaactcgaacctcctatggcgccattttgatgctacaaagccatcacctcccgttagcattccactgactagcattcattttgacgtcacttgacagtgaataactttacatctgaagcgtttaaagactatttgtccattgtttatttctaaagaaacacgacaatgtataaaaggctccattaccttgtatctcacgttatggctccgtagcagacgtttttgtaaaaataggctaacgattgtgtcacatagtagaggaattaccgtatagtacaggagaagctcgcaggcagtttcgacttacattagctgtttaggtttaattactaatgttaactagcattttagttagcaataattagcctgtgcctatgttatctccttacatttacctacgctctccgtctctgcaagattggtaatgattgagatttctcttggcacaactacttacaactttcagacacattgctcatgtcacatttacattgtctctctcagttggaggctgcgcagtaaagctagcaatcaccggaaaagtgcttctaatagccttcactggtctccgtccagagcaacggggtctgttggtccattcttatatactgtctatgggtagGTATAACTGCCTAGCCTACTTAATCTGTTTGTTACATTTCCCTCAGGTAAAGCGGTAGAACAATAGCTGTAACTATTTGAAGGACGAGAAGTCCTTCAATCAAACAACATCCGACAATAAGAAGAATGGTGAGACAAAACTTGCCAAAAAGGCTAAAAGTTTGTTCAAGTACCTCACCAAGCGGGAGGAGGCTTACCTATAATTAAGAACAAAATCGTTCAAAGCAGAGAATCAAAgtcatgctttaaaatatgCCACACAGATTTCCCTTTCTAAATGTATGTTGACAGTGGTAGGGGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29430 lncRNA downstream 10916 34090331 ~ 34158446 (-) True G21620
TU29379 lncRNA downstream 175109 33993936 ~ 33994253 (-) True G21575
TU29378 lncRNA downstream 176369 33992791 ~ 33992993 (-) True G21574
TU29377 lncRNA downstream 177264 33991667 ~ 33992098 (-) True G21573
TU29375 lncRNA downstream 179702 33989403 ~ 33989660 (-) True G21571
TU29476 lncRNA upstream 260576 34431071 ~ 34431298 (-) True G21665
TU29487 lncRNA upstream 386191 34556686 ~ 34562275 (-) False LOC120570300
TU29496 lncRNA upstream 615428 34785923 ~ 34786236 (-) True G21685
TU29538 lncRNA upstream 738870 34909365 ~ 34909721 (-) True G21716
TU29651 lncRNA upstream 845552 35016047 ~ 35016280 (-) True G21779
XM_039784065.1 mRNA downstream 64542 34093140 ~ 34104820 (-) True LOC120548089
XM_039823433.1 mRNA downstream 80469 34055285 ~ 34088893 (-) True dhx36
XM_039789121.1 mRNA downstream 346610 33820621 ~ 33822752 (-) True LOC120551620
XM_039789108.1 mRNA downstream 368263 33799811 ~ 33801099 (-) True LOC120551613
XM_039780547.1 mRNA downstream 442181 33724619 ~ 33727181 (-) True LOC120545898
XM_039789131.1 mRNA upstream 20965 34191460 ~ 34195454 (-) True LOC120551631
XM_039786803.1 mRNA upstream 39655 34210150 ~ 34213674 (-) True LOC120549707
XM_039789140.1 mRNA upstream 44653 34215148 ~ 34224958 (-) True LOC120551639
XM_039786815.1 mRNA upstream 59417 34229912 ~ 34233561 (-) True LOC120549714
XM_039786837.1 mRNA upstream 69069 34239564 ~ 34242703 (-) True LOC120549730
TU29436 other downstream 71021 34094562 ~ 34098341 (-) False LOC120548089
XR_005641864.1 other downstream 540094 33613429 ~ 33629268 (-) False mfsd1
TU29117 other downstream 1029231 33135892 ~ 33140131 (-) False LOC120549978
TU28992 other downstream 1333555 32802506 ~ 32835807 (-) False LOC120551578
TU28994 other downstream 1333997 32802569 ~ 32835365 (-) False LOC120551578
TU29485 other upstream 310963 34481458 ~ 34482033 (-) True G21674
unassigned_transcript_104 other upstream 876383 35046878 ~ 35046949 (-) True trnap-cgg
TU29998 other upstream 2148278 36318773 ~ 36330409 (-) False taok1a
XR_005641838.1 other upstream 2290185 36460680 ~ 36550114 (-) False dph1
TU30252 other upstream 3094078 37264573 ~ 37269320 (-) True G22245

Expression Profile