RNA id: TU29496


Basic Information

Item Value
RNA id TU29496
length 314
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G21685
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 34785923 ~ 34786236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACTAGAGGAGAGTGCAATATTCCCAATCGCAAAACTTCATTTGGGAAATCATCCTTTTCTTTTGTGGCCATAAGTCAGTGGAATACTCTCCCCACACATCCTATTACATGTACAAAGCCTCAAACCTTTTCGAGTTTGACAAAAGCATGGTTACTGTCACAACAAAATTGCACACAtttatgaggtgtgtgtgtgcctcagcCTCAGCAGGCCAAtgcaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgggagaGATAAGGATTTTGAGT

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29487 lncRNA downstream 223648 34556686 ~ 34562275 (-) False LOC120570300
TU29476 lncRNA downstream 354625 34431071 ~ 34431298 (-) True G21665
TU29451 lncRNA downstream 615428 34169362 ~ 34170495 (-) True G21640
TU29430 lncRNA downstream 627477 34090331 ~ 34158446 (-) True G21620
TU29379 lncRNA downstream 791670 33993936 ~ 33994253 (-) True G21575
TU29538 lncRNA upstream 123129 34909365 ~ 34909721 (-) True G21716
TU29651 lncRNA upstream 229811 35016047 ~ 35016280 (-) True G21779
TU29648 lncRNA upstream 260980 35047216 ~ 35096251 (-) False dyrk1ab
TU29695 lncRNA upstream 449839 35236075 ~ 35240308 (-) True G21805
TU29729 lncRNA upstream 479059 35265295 ~ 35269902 (-) False zgc:77784
XM_039783513.1 mRNA downstream 19790 34748462 ~ 34766133 (-) True LOC120547817
XM_039784214.1 mRNA downstream 41337 34735651 ~ 34744586 (-) True LOC120548153
XM_039789200.1 mRNA downstream 51302 34717486 ~ 34734621 (-) True LOC120551691
XM_039821480.1 mRNA downstream 76464 34700102 ~ 34709459 (-) True LOC120572251
XM_039789188.1 mRNA downstream 96961 34681877 ~ 34688962 (-) True LOC120551684
XM_039786711.1 mRNA upstream 79404 34865640 ~ 34869420 (-) True LOC120549655
XM_039789236.1 mRNA upstream 85637 34871873 ~ 34888054 (-) True LOC120551709
XM_039822451.1 mRNA upstream 114194 34900430 ~ 34972206 (-) True plch1
XM_039822457.1 mRNA upstream 114194 34900430 ~ 34960750 (-) False plch1
XM_039822465.1 mRNA upstream 114194 34900430 ~ 34954225 (-) False plch1
TU29485 other downstream 303890 34481458 ~ 34482033 (-) True G21674
TU29436 other downstream 687582 34094562 ~ 34098341 (-) False LOC120548089
XR_005641864.1 other downstream 1156655 33613429 ~ 33629268 (-) False mfsd1
TU29117 other downstream 1645792 33135892 ~ 33140131 (-) False LOC120549978
TU28994 other downstream 1950558 32802569 ~ 32835365 (-) False LOC120551578
unassigned_transcript_104 other upstream 260642 35046878 ~ 35046949 (-) True trnap-cgg
TU29998 other upstream 1532537 36318773 ~ 36330409 (-) False taok1a
XR_005641838.1 other upstream 1674444 36460680 ~ 36550114 (-) False dph1
TU30252 other upstream 2478337 37264573 ~ 37269320 (-) True G22245
XR_005636371.1 other upstream 2865223 37651459 ~ 37655795 (-) True si:ch211-105f12.2

Expression Profile