RNA id: XM_039819124.1


Basic Information

Item Value
RNA id XM_039819124.1
length 2897
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC120570635
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 38727508 ~ 38735823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTTGCTGCTCAGGATGTGGCAACTTTGCAGCCTAAACCTTTTTTAAGTCGACCTGTAAAACAGCATCAACTGTGCATTACCTGGAGTACACAAATGCTGCAATTAACTCAACAGCTTTCAAAGAAACAATGCCCTTTGGAGCAAGCTTTGGTATCACAAAGACATTGGTCCCTTATGGCAGTGAGGTTCTGGAGTATTCACGTGTTAAAGCCATCTCCATTCCATGGTGTATGTTCTCCATCTGGATATTTGTGACCAGACGCTGCCAGGACAACCTGTGTGGTGTGTTTTACCATATAGACCCCCATAACAACTACATCACACCAACACTGTTAATCAAAAAATCAGGGCAGCTACACGTCCAGATGGATGGCGAGTCTGGGGAATCCTCTGCATTGGTTTCCCCATTCAAGGTGCCTTTAAGTGAGTGGTGCCAAATCAGTGTGATGTTGCAGGGTAGAATGGTGACTGTCTCCATGGTGTGCGTGGATAAGGAGCAGAGAAGCCTTCATTCAATAGAACATATGATGGGGCATAATGTGAAGCTGGATGACACAGAGGGATACTTTGTGATTGGTGGAGGGAAATTCATACGAGGTGTGGAAGGTTATTTTGGGCCATTGGTTTACTACCGCAACAGGATATCACCTCACAGCATGcCTGAAGTTGTAATTCCAGATGTTATCAGGAACGTGAACCTGACTGGATGGCTGCAGACCTGTCAAGAATTTCATCTCGAGATGAATATTAAAATCAGTGGCTATTCTTTCAAGGCCGAACAGGAGATAGAGTCTGAGATCTGTTTCGATGCGTTCCATGAGTGGATGAAAAAGGACAGACTACCATCGTCACAGTGTGAGCTGTGGGAGGTGACTGTCCCTCATAGAAGACAAGCAGCAAAACTGGCCAAGTTATTGGCTTTCAAACATGGAGAAAGAAGAGCTAGTCTGCTAGCTGTGGGCCGAGCGCTGTACTCCTTATCACTTCATAAGCTGAGCAGAGCGAGCAGCACTGGTGTGGTCAGCAGAATATTACCACTGCTGCTCCAAGCTGGCTGCTTGGCTGATAACCGAGCTCTACACATGTCCTCAGTGCTCTACAGCGCTGGCCTGGGAGTCAAGGAACAGCCCAATAAGGCTTGGCTCCTGGCCCTGCTGGCAGCCCAAAAGGATGATCGATTAGCACTTCTGCACCTTGGGCACCTGCACCACCAGGGTCTCCATGGCCTCCCCACAGACCCAGACCTGGCCTATGCATATTATGCAAACATTGCTAAACAGACAACTTTAGACCGTCACAATCCCACACCAGAGCAgacatttgtTGAGGCTGTTTACTTAAACAATGACGAGGTGTTGAATCTCCAGACCAGTGAACATCATCATATCTTCCAATGGCTGAAACTGCAGGCACGCAGAGGAGCAGCTGAAGCCGAGCAAGCAGTTGCCCGCATGCTGTACTGGGGTCAGCAGGGAGTGACTCCAGACATCCAGAAGGCTGCGAGACACTACGAAAGGGGAGCTGTCCAGTGGGAGGAACCGGTGTCAATGTATGACTATGGAATAGTCCTACTACAGGGGCATGGTGTTGAAAAGGACATCCCAAAAGCTCTCACTTTTCTGAAGAAAGCAATGGACAAGAATTTTGTTCCTGCAATCAATGCCCTGGCCTGGTACTATGAGCACTTTGAGCAGGACTACGAGCAGGCAGTGCAGCTGTGGGAGAAGGCTGATCTCCTTGAGTGTCCAGAATCTGCTTTCAATCTCGGTGTCATGTACTCACAGGGTCTGTATCCAGGAAAAGCTGCTGACCAGTTTATGGCCTATCAGTACTACCTGAAGTCTGCAGAGAGAGGGCACATCAGGGGAGCAATTCACCTCGCTAGCATCTGGACCACTGGGATACCTGGCCGCGTCAACAGACATCCATCAGATGCTGTTTTGTGGGTAAAGTGGGCAGCTGAGCACAATGGATACCTGGGCAGCGTCTTGCGGAAGGCCTTGGATTCATATCTCAAGAGTGAcatGTTCAGCTCACTGTTATATTACATGATGGCTGCTGAGTCCGGGTATTCACCTGCCCAATTCAATGTGGCATATCTATGTGATCACCATATGTTAGGTTTTCTGGATCCTGCTTTTGCATCAAACTGTATGTGGAGATATTACAACCTTACAATCCAAAGTCAAAATCCTGACACTTATGCCTTGATTAGGATGGGTGACCTGTTATACGAGGGGCAGGGTGACGGGCGGTTTTCTTCAGCAGAAATGTACACACTGGCAGCAGTAAGGAACGAGCCACAGGGATGGTACAACCTTGGCCTCCTTGCTGAGGAGGGTTACAAGCTGCCGCTGTCAGTCTTGATTAAACTTGGCCTTTCAGAGCTGTACCTGGCCGACAACAGTTTGCTCCTAAGCACTTTGTACAAAAGATGCAGAGACTCAGAAGATACAGATTCATACTTTCCTTGCAGCCTCGCCCTCTTCAATGTGTATCTTCGGTCATTCCAAAAGGACTATAGTGCTGCTATTAAGTTCTCCACTGCGGTTGCCGTGGTTGCAGCTCCAACGATATTCCTAATCGTCCttggtgtgttcaggagacCTGTCCCATCTCCCAATTAGAACCAATATTATCTTATCAGGATTGTCAGTGCAACAAACTCAGGAACTAAACAGCAAAGTCAACCTGCACAGTGACAGCATTAACACATTTTGTGTTAGTTTACTATGGGATCACTGTAaagattattattaaaaaaaattatgttgtttttttagtacATGTCTGGAATGTTTTTTGGTTGTAAGTTActtactgttcaaataatgtaTTTACTTTTTGTGAAACAAATAACTTGATTGAACAATAAAGAGTTTGAATAAGTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30607 lncRNA downstream 374922 38352382 ~ 38352586 (-) True G22520
XR_005642040.1 lncRNA downstream 376188 38303806 ~ 38351320 (-) True LOC120575673
TU30523 lncRNA downstream 817390 37906362 ~ 37910118 (-) True G22462
TU30517 lncRNA downstream 823827 37902256 ~ 37903681 (-) True G22458
TU30409 lncRNA downstream 1034422 37692580 ~ 37693086 (-) False LOC120571840
TU30671 lncRNA upstream 78510 38813779 ~ 38814207 (-) True G22563
TU30683 lncRNA upstream 149958 38885227 ~ 38885642 (-) True G22575
TU30687 lncRNA upstream 170967 38906236 ~ 38906709 (-) True G22579
TU30699 lncRNA upstream 217745 38953014 ~ 38953369 (-) True G22591
TU30744 lncRNA upstream 307820 39043089 ~ 39043421 (-) False G22629
XM_039789345.1 mRNA downstream 78909 38353024 ~ 38648599 (-) True robo2
XM_039791698.1 mRNA downstream 851353 37869532 ~ 37876155 (-) True rrp8
XM_039789333.1 mRNA downstream 941630 37784943 ~ 37785878 (-) True LOC120551759
XM_039789319.1 mRNA downstream 950902 37775674 ~ 37776606 (-) True LOC120551756
XM_039785406.1 mRNA downstream 954972 37771547 ~ 37772536 (-) True LOC120548891
XM_039779479.1 mRNA upstream 896 38736165 ~ 38765038 (-) False stim1a
XM_039779471.1 mRNA upstream 896 38736165 ~ 38765038 (-) True stim1a
XM_039779486.1 mRNA upstream 3482 38738751 ~ 38765036 (-) False stim1a
XM_039820926.1 mRNA upstream 32276 38767545 ~ 38770608 (-) True pgap2
XM_039820919.1 mRNA upstream 32276 38767545 ~ 38770068 (-) False pgap2
TU30601 other downstream 363820 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 981238 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 1071713 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 1458188 37264573 ~ 37269320 (-) True G22245
XR_005641838.1 other downstream 2177394 36460680 ~ 36550114 (-) False dph1
TU31014 other upstream 1290613 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 2296537 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 4501413 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 4501413 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 4792585 43527854 ~ 43527925 (-) True trnaa-ugc

Expression Profile