RNA id: TU30981


Basic Information

Item Value
RNA id TU30981
length 2649
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G22807
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 39799299 ~ 39801947 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGTGTGAAGGTGGTGATAGTGGCGTTTCCTTTGCCAAGGTTGATCAGGTAGCCATGTTCTGGGGCACCAGTGATCCTAAAGGCCACGGAATTCTGAACgctgtctctgtcctctgcttTAAGGGTCTTACTGGTAATCACAAACCCCAGGTGACCAGTCTCTAGAACCCGCAATGTCGGGGCCCCCTTGTTCATCACAATCTGGGGCACCCCATTATCCACCGGGAGGACAGTAATCTTCATCATTTGGGGCTTTCGGGTCTCGAATACTGTGTCGGGGAAGATGTAGAAGTCTGTGTGAGTGCCATCAGTGACGGTGAAAGAGAAGCTGTCCTCTGCACTCTCTGTGCCGTCATGCTTGTAGCTGATCATGTTCTCATTCAGGTCCTGCTTTGTGAAGGAGGTGACAGGCCGGCTGTTGTTAAAGAGGAGGCGACCATGAACTGGGATTTGAGTGACTGTGAACTTTAAGAGGCGGTCGATAGTGTCTCTGTCCTCCACTGTTAGCTCAAAAGGCGTGATGAGTTTGTTCTCTCCTTCGGTTACCACCAGGCCGTGTATTGTCACTACAGGCTTTTTATTGTCCACGTCCGTGATGGAGATGCGGAAAGTGCGGAACACAGGGTTGTAGCCGTCGGTCACTTCAAATTCAAAGCTATCCATTTTCACTTCGTCATCGGAAGTGTGGATGTAGTAGACTTTGTTGCCAGCCAGCTGGAGCTGTGTGAAGGACGAGATGGGCAtcccaggtgtgtctgtgcaCTCCAGGTGTCCTCTCGTGGGAGCTCTGGTGATTGTAAAAACCAAGTGTTCGTCTGGGCTGTTGAGGTCGCTGGTGCTGAGCAGGTCTGTTGTCAGAGTAACCCTGCCACCCTCTTTAAGGGAGACACCTTTACTGATCACGTCTGGGAAAACCATGTCGATGCCACCCACTGTCACGTAGAAGTATCTGTCAATCAAAGGGTTGATGCCATCTGTCACATCAAATTTGATGAGGTCTCGAATCCCCTCTTGCCCGTTATGGGTGTACACAATTAAACCCTGATCCACTTCGCTTTGTGTAAAGTTCATTCCAACTGTGATGTTTTGTAAAGTCCCAGAGGGTGTTGCCCTCTGTAAATATCCCTGACCAGGCCCATAGCGGATAATATAAGTTAACGTGTCATCCTCTGAGTCCAGATCCGTGGCTTTTAAAACATCGCTGTTTATGACTTTCACGTCACCTATCTCAATTTCAAGGCCGTCATTGATTGCCATCCTCGGTGTCTCGTCGTCCACAGGGATAATCATAACTATTACCGTTTTCTCTACACTGAACTTTCCGTCGGTGAGAACAATATCAAAGCTGtcctctgtgctctctgagtCATCGTGCTCATAAACAATGCTGGAGGCCTCTCTGATCTGATCCAAGGTGAAGTTTGAGACGGGGATAGTGCCGGTAGTGAGCTGATTGAGAATAAATCCGTGCTTGGGGGGTTTGGTAATAATGAATGTGAGCTGATCAGAGGGGAGATCTGCATCAGCGCCATTCAGAATGGGAGTGTCTATGACTATGTTCATGCCCTCCATAACTACAAACTCTCTCATGTAAATCTCAGGCTTTTCATCATTAGAGGGGATTATGGAGATAGGGAAAAAGTGCCTTTCAGAGAAATTGATGCCATCAGAGCATCTGAACGTAAACCTGTCCTCCACTGGCTCGACTCCTCTGTGAATGCTTTGAACGTAGTTAATGTGATTCTGTCTGATGTCCTTGATGGTCAAAGCGCTAATAGCTGTCCCGGACCTGGATTTCTCTGAGCCGGGGGCAGGGGAGATATTTTCCACGTACCCTGAAGTCGGCTGTACAATGATTGTACAAAGGAGGTCATCGTTGGAGGTGTCTGCATCATCAGCGCTTATATGAAGAATTTGAATGACATTCTTCTCTCCCTCAATAACAGTGAACTGAGGACCCACAAAGACCTCTGGAGCCTGGCTGTCCAGGGGAAGAATAGTTACATGCACTCTGACACCTGTGATCTTATTTCCCCCTACAGTCCACTCATCAGACATGTCCGTCAATGTGAGATTAAAAAAGTCCTCCTTTGTGGTCAAACCTATCTCCCCGCTGGTATGAGCATAGACCACAAAGCCGTTAATGATATCAGCTTGGGTGAATGTGCCAGATTGGACACCTTTCACCAGAATGACACCTAATGATGGTGGGTCCTCCACAATGAACGTCAATCGGAGGTCATCCGTGTCCTCATCTCTTCCCTGAATGACATTACTTGTGATTTCTGTTGCTCCATTTTCCAGTACATCTATGTAGGAGCCAATTGTGCCAGCTGGGAGACTGATAGTTGGAGTCTCATCATCAATTGGCTTCACTGTAATCTTTATAGTAATTGGGACAATGTGGACGCCATCGCTGACATCTATTTGTATTGAATCAACCGTTGATTCATCTCCATTATGGATGTATGACATTCTGCCATTTCCAATATCCTCGAGGCTGAAAGTGTCTCCTCTTGTCATTTCAGTGAATGTGAACTGGATCTGGCCATGCAGTGGAGGCTGGGTAATAGTGAAGGATATCtgtttgttgtctgtgtctgtgtctgaggTGTCCAGCTCAGCACTTGTAATGATATGCGTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636903.1 lncRNA downstream 2529 39794947 ~ 39796770 (-) True LOC120546628
TU30941 lncRNA downstream 87530 39711472 ~ 39711769 (-) True G22773
TU30940 lncRNA downstream 97417 39701506 ~ 39701882 (-) True G22772
TU30807 lncRNA downstream 567445 39227543 ~ 39231854 (-) True G22679
TU30806 lncRNA downstream 571896 39226744 ~ 39227403 (-) True G22678
TU30988 lncRNA upstream 32317 39834264 ~ 39834463 (-) True G22812
TU30989 lncRNA upstream 36644 39838591 ~ 39838830 (-) True G22813
TU30990 lncRNA upstream 49090 39851037 ~ 39851236 (-) True G22814
TU30991 lncRNA upstream 51375 39853322 ~ 39853605 (-) True G22815
TU30992 lncRNA upstream 52333 39854280 ~ 39854594 (-) True G22816
XM_039781311.1 mRNA downstream 21379 39759961 ~ 39777920 (-) True LOC120546381
XM_039781319.1 mRNA downstream 42721 39735716 ~ 39756578 (-) True LOC120546392
XM_039781326.1 mRNA downstream 42745 39735716 ~ 39756554 (-) False LOC120546392
XM_039781486.1 mRNA downstream 102694 39693607 ~ 39696605 (-) False LOC120546526
XM_039781361.1 mRNA upstream 66461 39868408 ~ 39901447 (-) False LOC120546419
XM_039781355.1 mRNA upstream 66461 39868408 ~ 39901447 (-) False LOC120546419
XM_039781376.1 mRNA upstream 66461 39868408 ~ 39890055 (-) False LOC120546419
XM_039781347.1 mRNA upstream 66461 39868408 ~ 39890055 (-) False LOC120546419
XM_039781367.1 mRNA upstream 66461 39868408 ~ 39881759 (-) True LOC120546419
XR_005641089.1 other downstream 1063476 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 1435611 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 2053029 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 2143504 37651459 ~ 37655795 (-) True si:ch211-105f12.2
TU30252 other downstream 2529979 37264573 ~ 37269320 (-) True G22245
TU31014 other upstream 223935 40025882 ~ 40033156 (-) False LOC120546248
unassigned_transcript_105 other upstream 1229859 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 3434735 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 3434735 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 3725907 43527854 ~ 43527925 (-) True trnaa-ugc

Expression Profile