RNA id: TU31749


Basic Information

Item Value
RNA id TU31749
length 474
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G23473
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42934333 ~ 42934806 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cataagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccaacaattccagtaattccctcaagagcaagcagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacgagccggttgggggtgtgatgaacagtggcgatagtagtcacattaataatggaacagtgactggatgtagcgggaagctgcagggttcagcaggacgcagcatgacattgcagggcatcgctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttggtgccaacgttctccaaggaaatacgctgggggaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31746 lncRNA downstream 6884 42927152 ~ 42927449 (-) True G23470
XR_005641502.1 lncRNA downstream 93338 42838453 ~ 42840995 (-) True LOC120572866
XR_005641503.1 lncRNA downstream 94907 42838453 ~ 42839426 (-) False LOC120572866
XR_005641075.1 lncRNA downstream 101662 42821613 ~ 42832671 (-) True LOC120570523
XR_005638096.1 lncRNA downstream 201950 42731419 ~ 42732383 (-) True LOC120553091
TU31762 lncRNA upstream 44856 42979662 ~ 42979887 (-) True G23486
TU31766 lncRNA upstream 47049 42981855 ~ 42982140 (-) True G23490
TU31773 lncRNA upstream 54668 42989474 ~ 42989764 (-) True G23497
TU31817 lncRNA upstream 154012 43088818 ~ 43097018 (-) True G23537
TU31820 lncRNA upstream 194733 43129539 ~ 43150971 (-) True G23540
XM_039786068.1 mRNA downstream 23596 42904813 ~ 42910737 (-) True LOC120549271
XM_039791142.1 mRNA downstream 165767 42739636 ~ 42768566 (-) True gal3st2
XM_039791104.1 mRNA downstream 312373 42393288 ~ 42621960 (-) False fat3a
XM_039826347.1 mRNA upstream 57985 42992791 ~ 43063245 (-) True efhd1
XM_039824045.1 mRNA upstream 307748 43242554 ~ 43346673 (-) False LOC120574039
XM_039792056.1 mRNA upstream 446320 43381126 ~ 43383213 (-) True LOC120553532
XM_039819073.1 mRNA upstream 631774 43566580 ~ 43578411 (-) True LOC120570616
XM_039791810.1 mRNA upstream 779476 43714282 ~ 43716741 (-) False LOC120553425
unassigned_transcript_105 other downstream 1902455 41031806 ~ 41031878 (-) True trnak-uuu_7
TU31014 other downstream 2901177 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 4198510 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 4570645 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 5188063 37734865 ~ 37746270 (-) False p4ha3
XR_005641814.1 other upstream 301876 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 301876 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 593048 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 593383 43528189 ~ 43528260 (-) True trnag-ucc_1
unassigned_transcript_108 other upstream 593630 43528436 ~ 43528517 (-) True trnas-aga_1

Expression Profile