RNA id: TCONS_00008611


Basic Information

Item Value
RNA id TCONS_00008611
length 1478
lncRNA type sense_over
GC content 0.48
exon number 12
gene id XLOC_003446
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24339362 ~ 24356093 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGATTGTTTGCCGCCAGTCAGTTCGTCGTTTATAACCGCAACGCACACATTGTGACTAGTATCAATTGAAACGACAAAGTTTTGGCTTAATATAATTGTGTTTTTTAGGTTTGCGTGGATTCGAATCAATCGACCAGGGTTGCAACTGTAGCTGAAACGGACCGTAGATCCGGGATTTACCGCTCGTTTGTGGAGCCAAGACTGTGACGCTCTGTAGGCCGCAGTGTAACGTTTTAAGatcaacaacaacaacatggccGATGATTTGGACATTGAAGCAATGCTCGAGGCTCCATATAAAAAGACTTGCCTATATCTCACCTCTACTCCCATGAATTCCAGTGTGAACTGTCAAAAAAATGAAGGATGACAACAAGTCCTTAAGTACCAATGGCCACGAGGAGCGGAGCAAGAAaaaaaagaggAGCAAAAGTCGCAGCCGGAGTCGGGACAGGAAGAGAAGCAAGAGTCGCGAGCGCAAAAAGAGTCATGACCGGAGGAGGAGCCGCAGCAGAGACCGGAAGCGCAGCCGCAGCAAGGAGAGACGTCGCAGCCGTTCTCGGAGCAGGGAGCGCGGCGGTCGCTACAGAGCTCCATTTTCTGGCCTGAAATTTAACGGTGGTCCCAGGGGGAAGACTGGCCCACCACCTGCCATCAAACTAAGTCGAAGAAGGTCTAGAAGCCGAAGTCCTTTCAAGAAAGATAGAAGCCCTGTAAGACAGCCCATTGACAATCTCACCCCTGAGGAAAGAGATGCTCGCACAGTGTTCTGTATGCAGCTGGCAGCCAGAATCCGGCCACGAGACCTAGAAGAATTCTTTTCTGCAGTTGGAAAAgTACGAGATGTGCGAATCATCTCTGACCGAAACTCCAGAAGATCCAAAGGAATTGCTTACATTGAGTTTGTGGATTCCACATCTGTACCCCTGGCAATTGGTCTATCTGGACAAAGGCTTCTTGGAGTACCAATCATTGTCCAGGCTTCACAGGCTGAGAAGAACAGAGCCGCTGCATTGGCCAATAACTTGCAGAAGGGCAGCGCAGGACCCATGAGGCTCTATGTTGGCTCATTGCATTTCAACATCACAGAAGACATGCTCCGAGGCATTTTTGAACCATTTGGAAGAGTAAATAGtgtttactgttattttatcACCTTGAATTGATACATTATTCATGAATCTTTCCTTGCTCGTACAGATTGATAGTATCCAACTGATGATGGACAGTGAAACAGGACGATCTAAAGGATATGGTTTTATCACATTTTCTGATGCTGAATGTGCAAAGAAGGCACTGGAACAGCTTAATGGCTTTGAGTTGGCTGGTAGACCAATGAAAGTGGGACATGTGACGGAGCGCACAGATGCCTCCACCGCCAGCTCCTTCCTGGACAACGATGAGCTAGAAAGAACCGGTATTGATCTGGGGACTACAGGAAGACTTCAACTCATGGCCAGATTAGCTGAGGGAACTG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008610 lncRNA upstream 87780 24120291 ~ 24251616 (+) False XLOC_003442
TCONS_00008400 lncRNA upstream 161745 24176418 ~ 24177651 (+) True XLOC_003443
TCONS_00006722 lncRNA upstream 188179 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00008608 lncRNA upstream 255808 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006773 lncRNA downstream 556463 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 715446 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 837841 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 838076 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 867640 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006730 mRNA upstream 7344 24316110 ~ 24332052 (+) True XLOC_003445
TCONS_00006727 mRNA upstream 8078 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006728 mRNA upstream 9204 24313994 ~ 24330192 (+) False XLOC_003445
TCONS_00006729 mRNA upstream 10745 24314148 ~ 24328651 (+) False XLOC_003445
TCONS_00006726 mRNA upstream 28751 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006745 mRNA downstream 4409 24348425 ~ 24356093 (+) True XLOC_003446
TCONS_00006747 mRNA downstream 276726 24620742 ~ 24658494 (+) False XLOC_003448
TCONS_00006748 mRNA downstream 276802 24620818 ~ 24664031 (+) False XLOC_003448
TCONS_00006749 mRNA downstream 295727 24639743 ~ 24662785 (+) False XLOC_003448
TCONS_00006750 mRNA downstream 295727 24639743 ~ 24663227 (+) True XLOC_003448
TCONS_00006723 other upstream 160458 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006700 other upstream 942011 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1625265 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2688758 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3287052 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006746 other downstream 236563 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006769 other downstream 537293 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 557862 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 636903 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 650717 24994733 ~ 25025497 (+) False XLOC_003461

Expression Profile

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