RNA id: TU32013


Basic Information

Item Value
RNA id TU32013
length 561
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120545612
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43668431 ~ 43669661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagaggcagggccAACAGAGGAAACTGATAGTGGAAATGAAATAGAACTAGGAAACtataaaactaaaacaaaagactcacagccagccgaccccaaccatcacaGGGATTGGAGTCATTTGTCTGTCCAGCCTGTGTCCCTGATCAGTTAGTTGTGTCTTTGGATGATCAAGTGCAAGAAACCAGGAAGGGGTAGGCACCACTATTGGTGAAGAGGTTGAGCAGGTTAACAGTTTCCTTTCAAGATGTGCTGTGACCACCAAATACATGTCAATGTCAGTAAGGACAGACATGTTAACAGTCCATGCCATGGGGTGGAATGACCGCAAGAGGGACAACCTCTATAGAGCCTTGTCTTCAAGATACTACAAGACATTAAAAAACACCATGAGGCAACTGTGACCCTGAAGAACATGCAGGAACAATGTCAGTGTTCTGATTACATACTGGAACAGTGTAAAGGACTGGTTAAGATTTTTTTCTATGAAATGTATATTGTTTACTGGAGGTGTTTTGTATTATAGAAATatactactggtcaaaagttttataACACccc

Function

GO: NA

KEGG:

id description
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31993 lncRNA downstream 70209 43597991 ~ 43598222 (-) True G23690
TU31942 lncRNA downstream 164633 43445657 ~ 43503798 (-) False G23648
TU31940 lncRNA downstream 208510 43445657 ~ 43459921 (-) True G23648
TU31941 lncRNA downstream 221998 43430630 ~ 43446433 (-) False G23648
TU31875 lncRNA downstream 295485 43372676 ~ 43372946 (-) True G23594
TU32015 lncRNA upstream 285 43669946 ~ 43670275 (-) True G23706
TU32044 lncRNA upstream 40891 43710552 ~ 43711108 (-) True G23728
TU32046 lncRNA upstream 43681 43713342 ~ 43713577 (-) True G23730
TU32081 lncRNA upstream 100957 43770618 ~ 43789410 (-) False smco4
TU32075 lncRNA upstream 101063 43770724 ~ 43789410 (-) False smco4
XM_039819073.1 mRNA downstream 90020 43566580 ~ 43578411 (-) True LOC120570616
XM_039792056.1 mRNA downstream 285218 43381126 ~ 43383213 (-) True LOC120553532
XM_039824045.1 mRNA downstream 321758 43242554 ~ 43346673 (-) False LOC120574039
XM_039826347.1 mRNA downstream 605186 42992791 ~ 43063245 (-) True efhd1
XM_039786068.1 mRNA downstream 757694 42904813 ~ 42910737 (-) True LOC120549271
XM_039791810.1 mRNA upstream 44621 43714282 ~ 43716741 (-) False LOC120553425
XM_039791633.1 mRNA upstream 100405 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA upstream 100405 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA upstream 100405 43770066 ~ 43789431 (-) False smco4
XM_039824982.1 mRNA upstream 413424 44083085 ~ 44087251 (-) True omgb
unassigned_transcript_121 other downstream 129318 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 130259 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 130849 43537511 ~ 43537582 (-) True trnaa-ugc_4
unassigned_transcript_118 other downstream 131736 43536624 ~ 43536695 (-) True trnag-ucc_5
unassigned_transcript_117 other downstream 132673 43535677 ~ 43535758 (-) True trnas-aga_4
TU32041 other upstream 31310 43700971 ~ 43701297 (-) False LOC120553425
XR_005638163.1 other upstream 31571 43701232 ~ 43716741 (-) True LOC120553425
XR_005637812.1 other upstream 1147254 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 1241166 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 1242195 44911856 ~ 44911928 (-) True trnar-acg_1

Expression Profile