RNA id: XR_005638163.1


Basic Information

Item Value
RNA id XR_005638163.1
length 1502
RNA type transcript
GC content 0.47
exon number 3
gene id LOC120553425
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43700971 ~ 43716741 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttacttttaaagttagcttgttagctagctaatacaACATTACAAGCTGATGCTAAGCATTGTTAAGATATATTAACCACACCAGACTGACTGTTATTTTGAGTGTTAACAATACATTATTTTCCCGACAGTCAAGAGTGGCGAGACAGTCAGTGTGAGAGCTAAGTCTTTTCACTCAATGCGAAAAAACGAGGCACCTTACAACATTCAGGTGGAGCTGTCCTTCGAGGAGCCATTCATTGGCAAGACCACCTGCAACTGTAAAGCTGGCTTGGGACAGTGCAATCACCTAATAGGACTGCTCTACACGCTGGCCCACTATATAAAAATGGGGTATGCATCTGTCCCCCCAACTGCAAGCAAAACATCTCTACCTCAAGCCTGGCATGTTCCATCAAGGACATTAGGTCTCACCCCAAGAGCAGTTAGCACTGTGACAGTATCCAAAGTTAAACCACCATTGGCTAATGCACCACCAAAGAAAAAACAGCGCTCTACTGAGGGGATTGTCTCTAATTTGTATTGTCCTGTGCCACTTCCATTACCAAGTGCTGAATTTGCAGAGACTCTTCATAGCAACCTGGCTAAAATCGGCAGTAAGAGCCAGATGTTAAAGTTACTGGAAGCAAACTGTAAGCAGCCTGCTGATCTGGTCTCCACAGAATTTGGGGACCTTCCCCGGGGTTCTGTATTAACTTACCAAACTCAACGTCCACTGTCcattttcagtgaaaatgaCCCTGAACTTCCTCTACCTCCACAGCCATGCTCATTTAGCACTGCTCTAGATGATACTGAAACATTCTTCTATGGTGGCCTGGCTGTCACACTGTCTGATGCAAAGCATCTAGAGATGGAAACCAGAGGACAAAGCAGTAGCAAGACCTGGCATCAAGTACGAGCCAAACGcctgacatcatcatcattcaaaAGAATCTGCTCCAGGGTGAGAGACTTTGACAGTTTGGCAGCCAACATGAAGGAGAAACAGTTGACATAAACTAAAACAATGAAGAGAGGCCTTGAAATGGAGCCAGTTGCTGCTGCTGAATACAAGGAAATCACTGGCAATGAAATCTACCCCTGCGGGTTTGTAATTAACCCCCATGCCCCACATCTGGGGACCTCACCTGATAGGAAAatcgcacagattgtcagtccgtccctgacTGGAGTCCGGGGAGTCAAGGGAGGAGTGGCTGAACACAGGAACGGAGGCAGGGCGGAACAGGGAGCCGCGAGGAGGGGACCGTATGGTGAAGCCAGCTGACTGGAGGTAGCGGAGCGAAATGGAGGAAATAACTGTAAGAGGAAACACAGAGTTAGCACAGGCAAGGACAGGTAAGTACAAAATGAGCCTCTGAGAGCTTGTACGGCGTTTCACCCGGGTGACTGAAGCAACGATCAAGCGAAGATGATGAGTGAAtctgaatttgaatttgagtcacggctccgcaccatggaatcagaatcgtatgcttccgtagctagccagcaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32015 lncRNA downstream 30957 43669946 ~ 43670275 (-) True G23706
TU32013 lncRNA downstream 31571 43668431 ~ 43669661 (-) True LOC120545612
XR_005636718.1 lncRNA downstream 31573 43668435 ~ 43669659 (-) False LOC120545612
TU31993 lncRNA downstream 103010 43597991 ~ 43598222 (-) True G23690
TU31942 lncRNA downstream 197434 43445657 ~ 43503798 (-) False G23648
TU32081 lncRNA upstream 53877 43770618 ~ 43789410 (-) False smco4
TU32075 lncRNA upstream 53983 43770724 ~ 43789410 (-) False smco4
TU32080 lncRNA upstream 53983 43770724 ~ 43789410 (-) False smco4
XR_005637395.1 lncRNA upstream 84479 43801220 ~ 43803888 (-) True LOC120549487
XR_005637394.1 lncRNA upstream 84479 43801220 ~ 43803073 (-) False LOC120549487
XM_039819073.1 mRNA downstream 122821 43566580 ~ 43578411 (-) True LOC120570616
XM_039792056.1 mRNA downstream 318019 43381126 ~ 43383213 (-) True LOC120553532
XM_039824045.1 mRNA downstream 354559 43242554 ~ 43346673 (-) False LOC120574039
XM_039826347.1 mRNA downstream 637987 42992791 ~ 43063245 (-) True efhd1
XM_039786068.1 mRNA downstream 790495 42904813 ~ 42910737 (-) True LOC120549271
XM_039791633.1 mRNA upstream 53325 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA upstream 53325 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA upstream 53325 43770066 ~ 43789431 (-) False smco4
XM_039824982.1 mRNA upstream 366344 44083085 ~ 44087251 (-) True omgb
XM_039824969.1 mRNA upstream 378107 44094848 ~ 44098473 (-) True LOC120574562
unassigned_transcript_121 other downstream 162119 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 163060 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 163650 43537511 ~ 43537582 (-) True trnaa-ugc_4
unassigned_transcript_118 other downstream 164537 43536624 ~ 43536695 (-) True trnag-ucc_5
unassigned_transcript_117 other downstream 165474 43535677 ~ 43535758 (-) True trnas-aga_4
XR_005637812.1 other upstream 1100174 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 1194086 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 1195115 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 1195414 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 1196450 44913191 ~ 44913263 (-) True trnar-acg_2

Expression Profile