RNA id: TU32162


Basic Information

Item Value
RNA id TU32162
length 4328
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G23811
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44222212 ~ 44226539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaaaacattttattactAACACTGGAATAGTTcaatttgtatattattatacagaAACTAACtgctttacaaaaacaaaatgatacAATATCACATGTATGTACAGTGTAGTAAATATACCATCTCAAATTGTACACAAATTATTTACAATTATCACACACTGCAATAAAACAAAACTCTGACTATTTGACTTTACAGACATTAGATTTTGCATAACATCAAATAAAACATGCCACATTTGGAGGTTTTTCATCGTACAAACCAATGACTGTTTTTAAATTAGTGCAAGTTAACCACTTGTTTAAGAGGTCAATGGATACAGAATCCTTAATATTTCCATTCACACACAAGTCAAACTAAAACGTGGAAACGATGGCAATCTGCTAACACGGTGCTCAAATAAACCTTGCATTCAACTTTAGCTGTGTCTTTTTAAATGTTCAGTTACTGATTCTGTATTCCAGgttttttagcttgttttaaaAGGAAATCAGGGAGTGTAGCTTTGAGAACAGTTAGACGGTGAAAAATTATATAGAGAATGTGTGGAATCTGACATTGAAATCTGAACATTTACCTTCAGATCAGCAGCCCTGATTTTAGATCCTAAAATCCTGCCCTTCTCAACCCAAGCATGGCTATACATCACTGCTTCAAACATCCTGTGTCAGAAAATATGACTTTAACAACTTAAAGGTGATGAAACACCATGCTTGACTCTAACTAGGGTTCTGACTATTTACATGGGAAGTAGAGCTGatgtttcattaaaaaaatcagcCAATCAGTATGGTCCAGCTGTTTTGGTAGCAAAGTTAAAAGATTTACATAATTTGTTTTTGATCAAAAACATCACTGGCTTGTTGGACAGTGCCTGAAACCACCTTATTGAAACGGACAGTCCAACAATTACATTTGCTATACGCAGCAATTGGCCAGGTCATGGAGGTGTGAACTTCTCTCTTCTGTGACTCTAGGTGTCCACACCTAGAGTATGGACTCCATGAATGCTTCCAAGAAGCGACTGTTGGAAAGTGTACGCGGTTATCCCCATTTGTATGATGTATAATGAACAGTTTTTGTTTAACCTTTTAGTGTGACCTTTCAGAACATGTATTAAACTTTTGCCTTCAGATGATACGTTCTATAAACTAGTTTTTTTTAACGCACACTAACTCAGGGGTGGCAATcacccaattttttttttttatgataatttgttaggtcggattcgaacctggGACTCAGCCTATATGCTCTACACACTCTAGAGGCCGCCCCTGGCAATCACACCATTTACTTAAAGTCCAGATTTAATACAAGCCAATCTGTCAGTGACATGTGTTAGTGACAGAGGGCGACGAGAAAAGTAAAGTTTCTGATGGACTTATTCAATAGCTAAGCTTCCACATCTGAAACTGGATTCATGAATTTAGTTCTTAATCATTACAGTTATGTCATTCTTTGAGGTTGAATTGCAAAATACTGCTTCTAAGGCTGTCTCAAATGAAAATGTCCCTTTCCATGAAATGTATCTAATGATCATGCGTTTATTTAAGGAGCTGCatggacagaaaaaaataattctctCAGACaaatttacaagaaaaaaatcAGTAGTGGTAACCTGAAATGGTAAGAAACAATGTGAGAGTCtgagcaaacaaaaaaaagtcagttgTATAACACTTAACCTTTGCCATGCATAGATTTTAAGGCAGGATGAAGCGTTTTGATGAACCAACCCTGCTGAGCTGTGGACAGAGGCTGTGAGTGGAGCACTGATCAACACAGTCCATTTCTACACCTGCAAACCAAAGAATCCTATGAAAATAATAACCAAACAAACTATTGTGTTTTAAACCTGTTAGTGTGCCTTTGTACCCTTCAGGCAGCCATTGGTTCCATCATTCCATCAAAAATGACCATCATGACTGCTTTAATGTTCAAGGGGCATGATTGTAGCGGAAttataataatgcattttaaatCCTAACCAATACACTGATCTAGTAAGACAATTTATTGGATATTAGTGCAATGCCTGTTCAAAAGTGTTTGGAACGGTGGCATGGTGTGTCCTGCACCATGGCCACGCGTCAGCCTTTTTTTGGCCGCTGAAAACTGTAGTGCTGAGATAAACAAATGACTGTGCAGGCACACAGAAGGCTCGTTTTTCATCTCATTTGATCAATCCAATACACATAAGacaaaactgaaaaaacatCCAAATGTTCCTTCTAAAAGAAACGATTGgaattattttttcatattatatCCATAATATGGGAAACGTACGAGATATTCATAACTATTTGTGCaggtatatttatttcaacattaacATGTCACAAAATCTTTTAATACATAAACTAATATCCTATACTGTGAAATTTTATATAAAGAGCGTAatagacctctctctctctgcactgtcTGCTAAACAATTAGCCCCCTACTACCCAGCCTCTAAATaagtaaaatgaaaaaacaacttaatgtttaatTCACACACACTTGTCAGCGCAGGATGAcattgctatcgccagatgagtgacgaTTTTGTTTGGCTaattttctgtaaccagtgGAATTAGCAAGTTGACGTTAGCCAACTAGCCAGCTGCTGGCCGTTCAGATTTGATCCTTTCACTtcgctcccactgtagggagaaTTCTTTGCCGAGAGAACAGATGACAGCCCGGGAGATTAACAGTCTGGTTAACCATCTGCCTTTGTCCGCTGTTATCCCGGCGGGGAGTGAAGCAGAGGGACTGTAGAATCCATTTGGTTCTGCCACTGCTGATTCGAGCAAACGCTGTTTGTTGTGGGTATCATAGCAACGTTTGTATCTGGTTTCCCTTTCTGAATGACCAATAGATTACTGCCGCCTGCTGGTATGGAGTTATTTCTTGCACGCATACGCAGAACGTACGTAGAACTTGGCAGTAGTCTCTGCGGTGCGCTTCAATGCCAATTGTTGGCCAAGACAAAGGCAACATGACTTGGCTTGCTGTTGAGTAGCTTGTTGTTAAGTAGCCTTAATGCTGTTGCATGTTCCCAGGTGTGGCCATAAAACCAACGCAAAGCCACTGGCATGTTCTGAGAAATGTTTATATTCCATACAAAACAAAGAATTAGAGATTTGAACTATCTCTACATATCTCCAAGAAAGTTTACGAgctttgtgtttattttctggccTGATTTGTCTAACAATGTCCAGGTGCTTTTTGGCCCTTGTTGTAGGCCTTGAAGCAGCTTGCTTTTCGCTCGGGTGCTTTTCTCACTCTAGAAGACTTTATTGACATCACCTTTCACAAAGATTTACTCAAAACTGTTGATAAACTCTCCAAAAATATCGTTTTTCGTCGTATTTCTACTATTACTGTTTGCTATGTGCActcttttctcttcctccttgGCAGTAAATAGTGACAGCCGCAGCCTGCGATTCTGATCCTACAGTAGTCAGACAAGCTCTCGTTCTTTCTGGAACGGTTTCTCTGCTTTTATGAAAGTCTTTTTCGATAGCACCAATGGTGTAGGTGTTACGCTAATGTGAAGCCCGCCTGCAAATGTGGGACGCAGCCAGTAACTCTTGTCTGTGATTGGACGGTCATATGTCCATATATCCCTGTACTaagcagtagggctgggcgatatggaccaaaagtcatatcccgatatattttggctgaatatcgatatacgatatatatcccgatatttttttccgcgaattgagagcaaatgttcagtcaaagcccaaatgaaatatgacatgtcacaagtagtttcatagaaacagttgcaaaatcaaataaataataaaccggtttcttcacctggttcatgattaaatgctcagctgttcaaataacaataaaatgtaaacctaaatactgtataacaggagtaacttttttgaaatcaaagctccataggctatttgtgattcgttccaaaggtcaattaagcttttgatattaatataatctactttgttaaaaatgtaatgcctcatgcctgtaagcctaggttatagtcccattcttccacttgatactgcttccacttaagtaaactaaaagatgaactatcgactacaaaacaaagaaactaattaatgtgttaatacaaagaatatttattatgatcggttcacagatctgagtccaaacggaaacttcacccttctgaactaagagtttctgcttcaaggtgaagtttaaacagactgaaatgtccaggctcattcctccactatttatttctgtatgtatttatgcgttacatgtaattttaacgggcactgagctccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32140 lncRNA downstream 84460 44137372 ~ 44137752 (-) True G23799
TU32092 lncRNA downstream 398797 43823067 ~ 43823415 (-) True G23759
XR_005637395.1 lncRNA downstream 418324 43801220 ~ 43803888 (-) True LOC120549487
XR_005637394.1 lncRNA downstream 419139 43801220 ~ 43803073 (-) False LOC120549487
TU32080 lncRNA downstream 432802 43770724 ~ 43789410 (-) False smco4
TU32268 lncRNA upstream 547666 44774205 ~ 44774439 (-) True G23906
TU32275 lncRNA upstream 579259 44805798 ~ 44806039 (-) True G23912
TU32274 lncRNA upstream 585614 44812153 ~ 44816376 (-) True G23911
XR_005637325.1 lncRNA upstream 639591 44866130 ~ 44880509 (-) True LOC120549067
XR_005637324.1 lncRNA upstream 654131 44880670 ~ 44884338 (-) True LOC120549064
XM_039824994.1 mRNA downstream 108141 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA downstream 108141 44098963 ~ 44114071 (-) True LOC120574575
XM_039824969.1 mRNA downstream 123739 44094848 ~ 44098473 (-) True LOC120574562
XM_039824982.1 mRNA downstream 134961 44083085 ~ 44087251 (-) True omgb
XM_039791622.1 mRNA downstream 432781 43770066 ~ 43789431 (-) False smco4
XM_039789460.1 mRNA upstream 511322 44737861 ~ 44739433 (-) True LOC120551889
XM_039788116.1 mRNA upstream 590089 44816628 ~ 44824987 (-) True mrps23
XM_039777980.1 mRNA upstream 741659 44968198 ~ 44986626 (-) True phf12b
XM_039778005.1 mRNA upstream 761424 44987963 ~ 45315867 (-) False sez6b
XM_039777999.1 mRNA upstream 780614 45007153 ~ 45315867 (-) False sez6b
XR_005638163.1 other downstream 505471 43701232 ~ 43716741 (-) True LOC120553425
TU32041 other downstream 520915 43700971 ~ 43701297 (-) False LOC120553425
unassigned_transcript_121 other downstream 683099 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 684040 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 684630 43537511 ~ 43537582 (-) True trnaa-ugc_4
XR_005637812.1 other upstream 590376 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 684288 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 685317 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 685616 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 686652 44913191 ~ 44913263 (-) True trnar-acg_2

Expression Profile