RNA id: TU32333


Basic Information

Item Value
RNA id TU32333
length 241
lncRNA type intronic
GC content 0.49
exon number 1
gene id G23964
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44998977 ~ 44999217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtacagagtgaaaggcaccctgaaccaaaacggctaccacagcattttgcagcgacatgcagtaccctctggtatgcgcctagttggtcagagGTTCATCCTAcggcaagataatgacccaaaacataagtccacgCTATGCcagagtggccagcacagtcaccagacttaaaccccattgagctggtttgggatgaactggacagaaaagtgaaagcaaagcaacctacaagtgccac

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32317 lncRNA downstream 33007 44965739 ~ 44965970 (-) True G23949
XR_005637324.1 lncRNA downstream 114639 44880670 ~ 44884338 (-) True LOC120549064
XR_005637325.1 lncRNA downstream 118468 44866130 ~ 44880509 (-) True LOC120549067
TU32274 lncRNA downstream 182601 44812153 ~ 44816376 (-) True G23911
TU32275 lncRNA downstream 192938 44805798 ~ 44806039 (-) True G23912
TU32347 lncRNA upstream 4217 45003434 ~ 45005501 (-) True G23977
TU32357 lncRNA upstream 319390 45318607 ~ 45318882 (-) True G23986
TU32361 lncRNA upstream 331515 45330732 ~ 45330998 (-) True G23990
TU32367 lncRNA upstream 339289 45338506 ~ 45338872 (-) True G23996
TU32409 lncRNA upstream 468945 45468162 ~ 45468385 (-) True G24036
XM_039777980.1 mRNA downstream 12351 44968198 ~ 44986626 (-) True phf12b
XM_039788116.1 mRNA downstream 173990 44816628 ~ 44824987 (-) True mrps23
XM_039789460.1 mRNA downstream 259544 44737861 ~ 44739433 (-) True LOC120551889
XM_039824994.1 mRNA downstream 884906 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA downstream 884906 44098963 ~ 44114071 (-) True LOC120574575
XM_039777999.1 mRNA upstream 7936 45007153 ~ 45315867 (-) False sez6b
XM_039777990.1 mRNA upstream 7936 45007153 ~ 45315867 (-) True sez6b
XM_039791360.1 mRNA upstream 496320 45495537 ~ 45628896 (-) False myo18ab
XM_039791353.1 mRNA upstream 496320 45495537 ~ 45628896 (-) False myo18ab
XM_039791346.1 mRNA upstream 496320 45495537 ~ 45628896 (-) False myo18ab
unassigned_transcript_136 other downstream 72521 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 72818 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 73419 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 73717 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 76364 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 2135640 47134857 ~ 47142549 (-) False bet1l

Expression Profile