RNA id: TU32736


Basic Information

Item Value
RNA id TU32736
length 239
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G24295
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46647605 ~ 46647843 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattcacggctttgttctagcgccgctgggcctccctctctccagtctctctctatgtctctccaccatataacgctctctctcttcagtctctctctatgtctctccaccatataacgctctctctcttcagtctctctctatgtctctccaccatataacgctctctctcttcagtctctatctctctccaccatataacgctctctctcttcagtctctctctatgtctctccacc

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32735 lncRNA downstream 638 46646646 ~ 46646967 (-) True G24294
TU32734 lncRNA downstream 20287 46627114 ~ 46627318 (-) True G24293
TU32723 lncRNA downstream 140525 46505466 ~ 46507080 (-) False G24284
TU32724 lncRNA downstream 140525 46505466 ~ 46507080 (-) True G24284
TU32715 lncRNA downstream 219060 46428338 ~ 46428545 (-) True G24277
TU32738 lncRNA upstream 18627 46666470 ~ 46667066 (-) True G24297
TU32742 lncRNA upstream 42604 46690447 ~ 46690682 (-) True G24301
TU32750 lncRNA upstream 48632 46696475 ~ 46700489 (-) True LOC120570595
XR_005641086.1 lncRNA upstream 49068 46696911 ~ 46700490 (-) False LOC120570595
TU32758 lncRNA upstream 76823 46724666 ~ 46725013 (-) True G24317
XM_039780274.1 mRNA downstream 742598 45872223 ~ 45905007 (-) True akap1b
XM_039785509.1 mRNA downstream 786513 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA downstream 786513 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA downstream 786513 45821489 ~ 45861092 (-) False cuedc1b
XM_039823176.1 mRNA downstream 839183 45784600 ~ 45808422 (-) True wsb1
XM_039824258.1 mRNA upstream 470554 47118397 ~ 47134701 (-) True exosc5
XM_039824274.1 mRNA upstream 487011 47134854 ~ 47142596 (-) True bet1l
XM_039781949.1 mRNA upstream 495898 47143741 ~ 47150610 (-) True psmd8
XM_039785285.1 mRNA upstream 510202 47158045 ~ 47170349 (-) True ehd2b
XM_039785292.1 mRNA upstream 510202 47158045 ~ 47170348 (-) False ehd2b
unassigned_transcript_136 other downstream 1721149 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 1721446 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 1722047 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 1722345 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 1724992 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 487014 47134857 ~ 47142549 (-) False bet1l

Expression Profile