RNA id: TU32750


Basic Information

Item Value
RNA id TU32750
length 1444
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120570595
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46696475 ~ 46700490 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACTGTCATATGTTAGTGAATGAGTTTGGAGGAAGCAGCCGCGGCGGCGGAGGGCAAGCAGCGCGGAGGGGAGAGGCGCACACTTTTTTCAGCTGCTGAGCAAAGTGTCTTCTGGGCATGAGGGGGGCATGGAGGAGGAATCTGAGCAGGAAAGAGACACAATGCCTCCGCCGCTGCAGTACTGCaactgagtgagtgagtgtggggGTACGGCGGAGGCAAGGCCGGGGCTTTGGAATAGAGACTGATCCGAGCAGGCTGTGAGAGTCGGGCTGTGTGACGTTACAAGCCGGGCCGGTGAGGCCGGGCAGGCTGCCGGGGGGACAGAGCGTGACTCCGGGAACACAGAGACAAATATCAGCCCCGGACTGGAGCTTTGATCAACTGAGCGTaccgggggggtggggggtgtcgGTCCGCTGCTCTTCTCCTGCAGTCTCTCTGCACGGTGgtttaatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctttttacaAAGGAATATTGCAAACATGCGCTGATATTCATAATTCATAATGCGTTAATTGTGCCTTATGAATGCGTTTATTTTTAGGAATAAACAGCCCCATTTCTGTTAAAACTGGCCCAGTTAATATCATttgtataatgtttttttttctccatctctaTTCCTATTAAAAACCACAAAGTTGGAATAGGGGAAATTATTCGAAGGTGCAGCTTTGGCAAAATGGGCATCTTTtttaaaaggaagaaagaaagaaaattgaaaAGCTCATGAGAAATAAGACAGGAATGACTTCATTTTATTTCGTTGCATTGTTTGTAAGTCACTTTAGACAAAAGTGTGCACATGGATGTAATGTGACATAATTTACACGCAATTACAAACAAAGAGGATTCTTTGAAACGAAAACACGTATAAAAATACACCTTTCctcagaaagaaaataaaaaaacgcattTTTGCCAGTAACGAAAAACAGTCTCAGAATTAATCTGTGCTTTTTTAAAAGCAGTATTTCTACGTAACAAAGTGATCACTTATGTCTACTCTTCTCTTGGCGGCGCAAAGAGCATGAAAAGCGCGCACATTTTTGACACAAAGTTCCCCATCATGTTCTTCAACTGTGGGTGGGTTTGTAGAGCAGGAGAGGATGGAGAAGGGCGGGGTTCACTttcccctccatccatccatccatccatccatccatccatccatccatccaaatcagaatcagaaaggtgTTTATTGCCCCAGTTACCCTACGTGGAATTCGCCTTGgtgattggtgcatacatacacaaacaaacataaacatgAATAAGAAAGAGACactccatccatctatccatccatcccgTTGCGCGGTGCTGACTGTGGAGCTGTGTACGCAGTTCAACAATCGACTGGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32742 lncRNA downstream 5793 46690447 ~ 46690682 (-) True G24301
TU32738 lncRNA downstream 29409 46666470 ~ 46667066 (-) True G24297
TU32736 lncRNA downstream 48632 46647605 ~ 46647843 (-) True G24295
TU32735 lncRNA downstream 49508 46646646 ~ 46646967 (-) True G24294
TU32734 lncRNA downstream 69157 46627114 ~ 46627318 (-) True G24293
TU32758 lncRNA upstream 24177 46724666 ~ 46725013 (-) True G24317
TU32767 lncRNA upstream 33360 46733849 ~ 46735392 (-) True G24326
TU32768 lncRNA upstream 41631 46742120 ~ 46742399 (-) True G24327
TU32777 lncRNA upstream 114284 46814773 ~ 46815283 (-) True G24336
TU32782 lncRNA upstream 137162 46837651 ~ 46838864 (-) True G24341
XM_039780274.1 mRNA downstream 791468 45872223 ~ 45905007 (-) True akap1b
XM_039785509.1 mRNA downstream 835383 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA downstream 835383 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA downstream 835383 45821489 ~ 45861092 (-) False cuedc1b
XM_039823176.1 mRNA downstream 888053 45784600 ~ 45808422 (-) True wsb1
XM_039824258.1 mRNA upstream 417908 47118397 ~ 47134701 (-) True exosc5
XM_039824274.1 mRNA upstream 434365 47134854 ~ 47142596 (-) True bet1l
XM_039781949.1 mRNA upstream 443252 47143741 ~ 47150610 (-) True psmd8
XM_039785285.1 mRNA upstream 457556 47158045 ~ 47170349 (-) True ehd2b
XM_039785292.1 mRNA upstream 457556 47158045 ~ 47170348 (-) False ehd2b
unassigned_transcript_136 other downstream 1770019 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 1770316 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 1770917 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 1771215 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 1773862 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 434368 47134857 ~ 47142549 (-) False bet1l

Expression Profile