RNA id: TU32767



Basic Information


Item Value
RNA id TU32767
length 1043
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G24326
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46733849 ~ 46735392 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acgcgatcaatcgcacctgcacagacccggtgctaatacagcaccggtgccttaacgaccgttatctaccggaccgaatagcaacgcggatttcgttgccttatttaggtgccacttaaatgactgcgcttctctctgatgctccgaaaacggacgttagagggaactgaaacatcgccgcacgggacgctagttaacactacagttggcagcaggtaacgttagcctagcgttagctagcagctggagtgaacacggttaaaatgctgagagctaaacggtgtaaaagtgtgtctgtatttcactggagaggattctaacaccagactgtagctgcccttgtctgaaaaacacagaagagatgtgtcacctttttcagcccttctgagtctgcagactcaaaaatttggaggcccccctgcaatgactctgaggacctcctgttgaagatctctgccttacattacatttacttttatactttaagtagttttgaaaccagtacttttacacttttacttaagtaaaaagcttgagttgatacttcaacttctacaaaagtattttcaaaccctagtatctgtacttctacttgagtaatgaatgtgaatacttttgacaccaatgcctcacgTCTCCTCACATCACGTGTCTTAGCCAAAAAGTTAAAATTGAACACGGCGCAAAGACTACAGCCGATGGCAAACTAGCATGTACGTTCTGCACACCCGCAAGAGGAAATAACTCTCCATACCTGCAGGTGGGGGTTAAGTATTGGTCATTCAAAAAGGGAAACTGGctggtggctgtggctcagtggtagagcggtttCCTGCCAATTGGAAttttggtggttcgatccctggccctgcagtccgggtcaaagtgtccttgggcaagacactgaaccctgagtttCCCCCGATGCctcgccatcggagtgtaaatgtgtgtgaatgtttatctgatgagcagggggcagcttgtacggcagcctcggccacagtgtgtgaatggtgaatgcttcctgtactatgtaaaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32758 lncRNA downstream 8836 46724666 ~ 46725013 (-) True G24317
XR_005641086.1 lncRNA downstream 33359 46696911 ~ 46700490 (-) False LOC120570595
TU32750 lncRNA downstream 33360 46696475 ~ 46700489 (-) True LOC120570595
TU32742 lncRNA downstream 43167 46690447 ~ 46690682 (-) True G24301
TU32738 lncRNA downstream 66783 46666470 ~ 46667066 (-) True G24297
TU32768 lncRNA upstream 6728 46742120 ~ 46742399 (-) True G24327
TU32777 lncRNA upstream 79381 46814773 ~ 46815283 (-) True G24336
TU32782 lncRNA upstream 102259 46837651 ~ 46838864 (-) True G24341
XR_005641651.1 lncRNA upstream 104568 46839960 ~ 46840802 (-) True LOC120573156
TU32789 lncRNA upstream 120405 46855797 ~ 46855999 (-) True G24344
XM_039780274.1 mRNA downstream 828842 45872223 ~ 45905007 (-) True akap1b
XM_039785509.1 mRNA downstream 872757 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA downstream 872757 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA downstream 872757 45821489 ~ 45861092 (-) False cuedc1b
XM_039823176.1 mRNA downstream 925427 45784600 ~ 45808422 (-) True wsb1
XM_039824258.1 mRNA upstream 383005 47118397 ~ 47134701 (-) True exosc5
XM_039824274.1 mRNA upstream 399462 47134854 ~ 47142596 (-) True bet1l
XM_039781949.1 mRNA upstream 408349 47143741 ~ 47150610 (-) True psmd8
XM_039785285.1 mRNA upstream 422653 47158045 ~ 47170349 (-) True ehd2b
XM_039785292.1 mRNA upstream 422653 47158045 ~ 47170348 (-) False ehd2b
unassigned_transcript_136 other downstream 1807393 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 1807690 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 1808291 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 1808589 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 1811236 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 399465 47134857 ~ 47142549 (-) False bet1l

Expression Profile