RNA id: TU32961


Basic Information

Item Value
RNA id TU32961
length 3720
RNA type TUCP
GC content 0.41
exon number 4
gene id bet1l
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47134854 ~ 47142596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCACTCGTCAACATGGCGGACTGGAATAGAGGTCATGGCTCTGTGGACGACCTGCTGGATGCTGAAAACAAACGGCTGGCTGAGAACCTGGCCACCAAAGTCTCCAGACTGAAATCTCTGGCGTACGACATCGACAGAGAGGCTGACGATCAGAACGAGTATCTGGACAGCATGgacTCAAACTTCCTGAGTGCGACGGGCCTGCTGAGCGGCAGCGTGAAGCGTTTCTCGACCATGGTCCGGTCCGGCAGAGACAACCGCCGCATCCTCTGCTACGTCTCCGTGGGCCTGGTCCTGGTCTTCTTCCTGCTTTACTACATGGTCTCCAGGATTCAACGCTGATGGGGGGGAAACCCAGGATCAGCCAGGAGCTGAGACTAGAGACTCATATCTGATAGGTTGAAATCATCTCTGTGGTTGTCCTGCACagggaaaagatgttttttctcTGCGTCCCCATGAGAAAACATTTAGTTGAAGCATTGAAAGTGACCAGCAGGGGGGTGTCGGCCTTAGCGGGGGTAAACGGGGGGTGGGCGTGTTCATACCAAAGATGCTGgagtctatttaaaaaaaaaattaaatgccTGGGCTTTTCCACTCTGCACCACCTTTGTTActagactcgttggagatgagccaggcctgcgcagaatcgatgaataaaacacccaaaatgcaatgaaagtaatcattaatttgacCTGCGAAGAATGTTGAATGGCTTCCATACAACGTACacccatgcatccatgttattttttttggcaatttggttgaaattaacccatatttctgatattaaaaaaaaccgttaaatgggtcaaatttgacccaaggaaaACGCAAGGGttaacagaacacatgttgtgtgccTGACGGGGATGTTCCATACATACGTTCAGATTACCGATCATCTCCCGTCCGCTTTaacaggcgaggcgcagctcatctcgaacgagacTAACGTCCGATGCCTCCAGGAAGTGGTAAAATGGGCAAAGAGAAGGTGGCGGTGAGGAAGCACTCATCCCAGCTCGAGTGTGATAGTCTGATGAACCTGTCAATCAAGACAAACTTGCCCCCAAAATATCAGTTTCATTAGAGAGTAGCTATTGGCTGGTCTTCGGAGCACCTGGTGATGTCACCATGTGTTGAAGGACTGTCAGTCAACTGTTTTATCTTCATGTCTTATTGTTTGCGTTAGCAGATAGCTCTTGTTACCATCTCATTTTATTGCTCCTGCAGTCGATTGACAACAGGCAAATACTGTTCCATTTGTACGCGGAAGTCGGATTTTGCCGAGGTCAAAGTCGGGAACGCGCCCCCTGAACTCGGATTTCTGAGCCCGGAACTCAGACGACATGGCTGCCCCGTGCATCAACAGCAGTAAAAGCGGTATAGCATACAGTTTATTAAGACTTCGGTCTTTTTTTGAGTCTCGCTAAGGCTGTGTCTTaaacacagtcctgtccaacttgtatctgtggacatgttggtatgctgttttttgcattttaatgcGTTATTATAAACTGGTATTGCTTAGAATAGCTAACCTGGATACAGCAACCCCACAATAAAAAATCTGACTTGttagtttttcttcttctctttttaatacattttattcatcaacttattaaatggaacgcattcaactcgggtgtgccgtcattcccagctccggtccgagttccgaggtaaatggaacgcactgtTACACCGCATACTGTAACACATGATTctgtttctccttttttctttttttaacccctAAACATCACTGTGTCCAGTTGTTTTACTTTAGTTTGATGAGCAGTTTTAGTTCAGTATGTGTAACGTCTGTTTCATATTAAATGTTGGACCTATCGTTACGTTGACATTTTGTATAATGatcacattttgtattttattttcatttttttatcccACGTTCAGTCTCATTGTGCACAGCAGATCACTGCCGAAAGGGACTGGAGGAGATTTAAGAGAGTTCAAAAGAGTTTATATATCTTAAGTTAACATTCCAGTCTGGACTGCTAATCAGACATCgcatacatttattattattatcattaataCAGAAGTATCAAATGGTTTTAATTGTGGAACTGGACATGGTTTTAATTGCTCCTTTTTACATGATTCATTTAGGTTCTAGGTATTATGTGAGGTTTACTAACAATAATTTATGACTTGCACATTTATGCTACAgtgttcaattaaaaaaaacgatCTAACTATCTATCATATGTATTTCGGTGGATTATTTTCCAGGAGACCGAACAACACATTGCTCCAAAAGCGAGACAAAACTCACCAATATTCTCAGCATATTTTGATAGAAAATCTTCAAATTTGGGCAACGCCAAAAATAAATGCACAACAGTGTCTTGACAACCACAACAGAAATTTAAATCAATGTCTCTCATATTCTTTTTtaatgtcgtttttttcagCTGGATAGAGTTTATGAATGAGTTTAAAAGAATTCTCAACTTTATTGGTGATTTAAATATTGGTTTGCAAGAAGCCAGGGCCTTCTGCCATGCCACATCGTACACAAATGGATTCCCATATGAAATGACATATATACAAATGTACCGGTAATATCGCTTTGGAAAAGAGTTTTTATAGTTATGTTGTTATTTCTAGAATAACTGGAAAACCCAATTTTGCCCATCAGAGTATATGTTGGAGATACTGTAACAAGCTTTACCTCGGCTGAGATTTATACAGACTCCAGAGGCGTTACAGGGATATTAtattctgacaaaaaaaaactttacagaTAAGGTCATCTCTATTAAATAACTGATCTACCAACAGAGATGTACAATCCCTTTAACCACACTGTTTATTTCATTATTCTtaattatgtaaataaacacacacaaatgatcaTTATCAGTTGTTACAGCTGTCCAACTGCAAATTTCATCATGACAAGAGGTTCGCAACttagagacaaaaaaagacGAGCCCTGGTCCTTTGGCTGCCTGGCTTGTGTCAAGCCACCTCCTGTTCCGTCTTTTTTACTCCCTATACCGCTTTTAAGCTATTGGTCATTTAATTCACTGTTCTAACTTTGTTCTTTTTTGATGTTGGTTTTACCATGCAAGTTGTTTTATCATGTTGTGTTTGTTATGTACTATAGCCTGATGTTGTTTCATTGGGAGCGTGcctgtgttcccacagccctatgttcccacatttctaagaattttctttttcattgaaaattaggccctatgttcccacagccctatgttcccacattggaaagatttcttttccaaaattaggccctatgttcccacatttcctttttcctaaatttgtatcagattttatccccctaaccctaaaacatGTTGTGGGAGGAGAGGGCTTAAAtttaagggaaatgtaggaacacaagacctaattttgaaaatgtcctagaaatgtggtaacataggactgtgggaacgaacataaggcctaattttcagtgtaaataaaaattcttagaaatgtgggaacataggtcctaattttcagtgaaataaaaaaattcttagaaaggtgggaacattgggctgtggggaCACAGGGCTGACCCCATTTCATCTATGTATCGAGGCATACTTCACCCCATCTGACCtgattgtaaagcactttgggccTGCTTATGCtggtttaaatgtgctatataaataaagatgacttgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32823 lncRNA downstream 106246 47028256 ~ 47028611 (-) True G24378
TU32822 lncRNA downstream 114782 47019238 ~ 47020075 (-) True G24377
TU32821 lncRNA downstream 118375 47016278 ~ 47016482 (-) True G24376
TU32806 lncRNA downstream 127030 46962918 ~ 47007827 (-) True G24361
TU32802 lncRNA downstream 174536 46960110 ~ 46960321 (-) True G24357
TU32970 lncRNA upstream 51940 47194489 ~ 47198862 (-) True G24499
TU32964 lncRNA upstream 62684 47205233 ~ 47206787 (-) True G24494
TU32974 lncRNA upstream 64992 47207541 ~ 47207790 (-) True G24503
TU32975 lncRNA upstream 65905 47208454 ~ 47208835 (-) True G24504
TU32976 lncRNA upstream 67658 47210207 ~ 47210412 (-) True G24505
XM_039824258.1 mRNA downstream 156 47118397 ~ 47134701 (-) True exosc5
XM_039780274.1 mRNA downstream 1229850 45872223 ~ 45905007 (-) True akap1b
XM_039785509.1 mRNA downstream 1273765 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA downstream 1273765 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA downstream 1273765 45821489 ~ 45861092 (-) False cuedc1b
XM_039781949.1 mRNA upstream 1192 47143741 ~ 47150610 (-) True psmd8
XM_039785285.1 mRNA upstream 15496 47158045 ~ 47170349 (-) True ehd2b
XM_039785292.1 mRNA upstream 15496 47158045 ~ 47170348 (-) False ehd2b
XM_039786367.1 mRNA upstream 29678 47172227 ~ 47188363 (-) False bicra
XM_039786369.1 mRNA upstream 29678 47172227 ~ 47188363 (-) False bicra
unassigned_transcript_136 other downstream 2208401 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2208698 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2209299 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2209597 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 2212244 44922541 ~ 44922613 (-) True trnar-acg_7

Expression Profile