RNA id: TU32979


Basic Information

Item Value
RNA id TU32979
length 243
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G24508
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47213994 ~ 47214236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacgcacaactgaaaccgccatggaagcacgagcacctactggaggacctcccgttatcgtagacgaccaggctcgacataagcaatggcccgatggcccggggccagtaaaaacgtatgtcgggctggttgcagccacagtcactggtgtgtgcgttacttcacgcagcacatgtactgagtggaaacgttaccgaggattatttaccgccgatggcgcagatgaactacactcgttactgt

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32978 lncRNA downstream 783 47212945 ~ 47213211 (-) True G24507
TU32977 lncRNA downstream 1145 47210623 ~ 47212849 (-) True G24506
TU32976 lncRNA downstream 3582 47210207 ~ 47210412 (-) True G24505
TU32975 lncRNA downstream 5159 47208454 ~ 47208835 (-) True G24504
TU32974 lncRNA downstream 6204 47207541 ~ 47207790 (-) True G24503
TU32984 lncRNA upstream 36150 47250386 ~ 47251960 (-) True G24512
TU32992 lncRNA upstream 81318 47295554 ~ 47299165 (-) False dhx34
TU32994 lncRNA upstream 145345 47359581 ~ 47365129 (-) True G24518
TU33002 lncRNA upstream 256153 47470389 ~ 47470979 (-) True G24523
TU33033 lncRNA upstream 315798 47530034 ~ 47530348 (-) True G24548
XM_039786369.1 mRNA downstream 25631 47172227 ~ 47188363 (-) False bicra
XM_039786405.1 mRNA upstream 1625 47215861 ~ 47225227 (-) True bckdha
XM_039786428.1 mRNA upstream 20317 47234553 ~ 47275950 (-) False LOC120549478
XM_039786438.1 mRNA upstream 20317 47234553 ~ 47270634 (-) True LOC120549478
XM_039786448.1 mRNA upstream 26278 47240514 ~ 47270634 (-) False LOC120549478
XM_039786248.1 mRNA upstream 81449 47295685 ~ 47325453 (-) True dhx34
TU32961 other downstream 71445 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2287538 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2287835 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2288436 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2288734 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile