RNA id: XM_039786248.1


Basic Information

Item Value
RNA id XM_039786248.1
length 3941
RNA type mRNA
GC content 0.57
exon number 16
gene id dhx34
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47295554 ~ 47325453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccatatatatatatgtcaatggtcttCGCAGCAGTCGACGCTGCAGCTAATGTGTCCAGTTGTTTTTCACCAGTTAGCTTTTCTTTTGTCAGCCCTGACTTATTATTGTCCGATAATCTCAGATGTATCCGTTTAAAACAATGCTAAGAAGGTGTATTCGGTCTGTCTTAGACATATGGAATCAAAACATCGGGTTTAAAACGGATGGGACCTTGTTAGTTTGTCCGTAATTTAGCCAGTTTAGAGGTAACATGTTTATTCAGCTGCTAGCTACAGCCGTGAATGTCTATTTAACGTGTTGGTGAATGAACTTGGTTGGTGTTGGAAGCGAGTAACGTATCTCACGGTAAACATGGATTCGGAGCGGGGGAGAGACAGCCGGAGTTGGGACTGGGACAGCCCGCAGTGCCGAGCCCAACTGGACGAGATCTTTTTCCGCCGACATGACTACATCCAGGCCGGCAGCCAGGAGCACAGAGAGTTCTGGGCTTTCTTTGACCGCTTCCAGAGGTTTAAAACAAAGAGGGACATATCTGCAGCAGGAGCAAAAGAGGACAGGAAAGACGGGAGAAAGACTGGCGCCGGGGCGCTAGACCTCGGCCTTCCTGAAGAGTACGATGCCCGCTACAGGAtcaatgtgtctgtgtgcactgGGGATGTGGAGGAGCGCCTGGGGAAGTCCGAGCACAAAGGCCGGCGGCAGAGAGCCTCAGTTCCAGGCAGCCAGGAGATCTCAGACTGCCGCCTGGCTCTGCTGCACTTCCTGGACTTCAGCCAGAGACAGAGCTTTGGGAAGCTGGCCAAGCTTCGCCGGGAGCAGAAGAACCTGCCCATCTTCCAGTACCGGGACCGGTTAGTGGAGCTGGTGCGAAAGCACCCCGTGGTTGTTGTGGCAGGGGACACAGGCTGTGGGAAATCTACCCAAGTACCTCAGTATCTTCTCTCGGCTGGCTTCAACCACATAGGCTGCACTCAGCCTCGGCGCATCGCCTGTATCTCCCTGGCCAAGAGGGTCAGCTTTGAGAGTCTCAATCAGTACGGCTCAAAGGTGGGGTACCAGATCCGCTTTGAGACCACCCGGACCCCAGCCACCAAACTGCTGTTCCTGACGGAGGGGCTGCTGTTGCGGCAGATCCAGCAGGACCGGACGCTGGCCCAGTACCAGGTGCTGATCGTGGACGAGGTCCACGAGAGACACCTCCACTGTGACTTCCTGCTCGGGGTCCTGCGCTCTCTGCTGGCGGAGCAGCCCGACCTGCGTCTCATCCTCATGTCAGCCACCATCAACATCAAACTCTTCTCCGACTATTTCAACGGTGCTCCCGTGCTGCAGGTGCCGGGCCGCCTGTTTCCCATACAGGTGATATACCAGCCCATTCCAGCTGAGGAGCAGCCCTCGCGCTCAGAGAAACTGGATCCCCGGCCATATCTGCGCATCCTGCAGGGCATCGATCAGCGTTACCCTCCAGAGGAGCGCGGCGACCTGCTTATCTTCCTCAGCGGTGTGGCAGAGATCTCCACCATCCAGGAGGCCTGTCAGATttatggcacacacacacgccgctgGATTGTCTTACCGCTACACAGCACCCTGTCACTGGCCCAGCAGGATAAGGTGTTTGACATTTCTCCTCCGGGGGTGAGAAAGTGCATCATCTCTACCAATATTGCAGAGACCTCCGTGACAATAGATGGAGTGCGCTTTGTTGTAGACTCAGGGAAGGTAAAGGAAATGAGTTTTGACCCTAAGGCTAAGATGCAACGTCTGCAGGAGTTCTGGATCAGCCGAGCCAGCTCTGAGCAGAGGAAAGGCCGAGCCGGTCGCACGGGTCCAGGAGTGTGTTACCGCCTGTACGCAGAGTCGGACTACGATGCCTTCGCCCCATATCCTGTCCCTGAAATCCACAGAGTGGCACTGGACTCCCTCATTCTTCAGATGAAGAGCATGTGTCTTGGAGACCCTCTTTCTTTCGTCTTCATCGACCCGCCTCCAGCTGCTAGTATCCAGACGGCAGTCACTTATCTGaagcagcagggggcgctagACGGGCGCGGAGAACTGACCTCTATAGGTAGTTTGCTGGCACAGCTGCCTGTGGATGTGGTCATAGGGAAGATGCTGGTGCTGGGCTCTTTGTTTAAGCTGGTGGATCCCGTGTTGACGGTGGCAGCGGCCCTCAGTGTTCAGTCGCCTTTCCTGCGCAGCGCACAGCACAACCCGGACTGCGCCACCGCCCGCCAGCCCCTGAACAGCAACCACGGAGACCCCTTTACCCTGCTCAACACCTTCAATGCCTGGGTGGAGgtgaagggagagagaggtggtggCTCGAGGAAGTGGTGCAGGAGGAGAGGCCTggaggagcagcggctctacgaGATGGTCAACCTACGCAGACAGTTCAAGGAGTTGCTGAGGAGCCATGGCCTGCTGGAATCCGAGCACAGCTCTCCCTCTGGCGGTGACCGCGGGCAGCGCAGGGAGAGGCTAGCAGAAAGGAAGAAGCTGCATCAGCTGAAGAGAGATCACGAGCAGCAGGAGAGCAGCAGGCGTAAAGTCCTGAGGATGGACGAGGGCCAGGACGGAGAGTTCTCCTCAGGATCCGACACCGAGGGAGGCGGCAGAGGCAAGAAGGACCAGGAGGGATCGGGACAGAACGTGGACATACAGGAGGTGAAGTTCAAGTTGCGTCACAACGTATCGGAGCTGCAGGAGGCGGCCAGCGTCAGTCAGGACATGTCCTCCCGCCAGCAGGCTTTGCTCAAGCTGCTGCTGTGCCGAGGCCTCTACCCCCAGCTGGCCCTGCCGGACGAACACAACACCGCCCGCAAGGACTCGGACCAGGTGTTTCACACAAAGAATAAGCAGGGAGTGGTAATTCACCCGACGAGCGTGTTTGCCAGTGACCCAGAGGTGCTACAAGTGCCCGAGGACGACACCAGAGAAATGGGGCCTGATAAGAGGGACAGCAGCAGACACCAGCTGCTAGCCTTCGTCACTCTGTTGGAGACCAACAAGCCAtatttgtccaactgtgtgcgGGTTCCAGCGCTGCAAGCTCTGCTGCTGGTGGCCAACTCTGTGGACAGTAACGCTGACTGCACGCGCCTGGTGGTGGATGGCTGGCTGGAGCTGGAGCTGCGGGAGGCGGAGGACGCCCTGAAGGTGCTGTCCACCGCTCTCACCCTCAGGGCCGAGTGGGAGCGCCTCCTGCTGGCCCAGCTGGGACAGAGCACGATGGGGGGAGCAGCAGTCCAGGGGGTGTCCCGCAAAGTCATGGAGAAGCTGAGTGAAGGCCTGGTCCGCTTCCTGCTTTACACCGAGGTCAGTTACAGCCTGCGGCGACTCACAGCGTTCCAGACCCAGAACCTGTACATCGGCCCCCCGTCTCAGTCGGAGCTGTCTCACACCAGCGCTCCAGATGTTAACCCGCTGTTTCCAGGAGTCGAGGCCAAGCCGGACCCCATTAAAGGAGGCCTGCGTGTCACCAGCTTCTTCAACTACAACTGTCTGGctGACTCAAAGGATCTCTACAGTGAGTGTTTACGCACTTTCTGGACCTGTCCTAACTGTGACCTGTACATGCCTCTGACTCCACTGGAACGCATGCAGCACGAGGCCTCCTGCAGGCCGGCAGGGGAACAGCAGCAACCGGAGGAAGAGCCAGAAGGTGGGAAGGCGAGCTCATCCTCCGTGTCCAGTCTTACCAGAGTTTATCACTGCGACGTCTGCGACGAAGATCTGTCGCTCACCTCCACTGAGATCCTCAAACATAAAAGGCAGCACATGTATTCTGTCAAGTAAAGGACAACAGCCTGTCCTGTTGAGGACAGACTTGagtttatactgtacaacaaaGTTGTTGTTTCATTTGTTTCACCGCTCTCCTTCCCTTTTGTACTTGAGGAACTTTATTAAAGTGCTATTGCTTCCCTCTAA

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20101 DHX34; ATP-dependent RNA helicase DHX34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32984 lncRNA downstream 43725 47250386 ~ 47251960 (-) True G24512
TU32979 lncRNA downstream 81449 47213994 ~ 47214236 (-) True G24508
TU32978 lncRNA downstream 82474 47212945 ~ 47213211 (-) True G24507
TU32977 lncRNA downstream 82836 47210623 ~ 47212849 (-) True G24506
TU32976 lncRNA downstream 85273 47210207 ~ 47210412 (-) True G24505
TU32994 lncRNA upstream 34128 47359581 ~ 47365129 (-) True G24518
TU33002 lncRNA upstream 144936 47470389 ~ 47470979 (-) True G24523
TU33033 lncRNA upstream 204581 47530034 ~ 47530348 (-) True G24548
TU33044 lncRNA upstream 240534 47565987 ~ 47566217 (-) True G24557
TU33047 lncRNA upstream 249037 47574490 ~ 47574716 (-) True G24560
XM_039786428.1 mRNA downstream 19735 47234553 ~ 47275950 (-) False LOC120549478
XM_039786438.1 mRNA downstream 25051 47234553 ~ 47270634 (-) True LOC120549478
XM_039786448.1 mRNA downstream 25051 47240514 ~ 47270634 (-) False LOC120549478
XM_039786405.1 mRNA downstream 70458 47215861 ~ 47225227 (-) True bckdha
XM_039786362.1 mRNA downstream 107322 47172227 ~ 47188363 (-) False bicra
XM_039787634.1 mRNA upstream 805 47326258 ~ 47355399 (-) True st14a
XM_039787683.1 mRNA upstream 34660 47360113 ~ 47469462 (-) False aplp2
XM_039787665.1 mRNA upstream 34660 47360113 ~ 47469462 (-) False aplp2
XM_039787675.1 mRNA upstream 34660 47360113 ~ 47469461 (-) False aplp2
XM_039787656.1 mRNA upstream 34660 47360113 ~ 47469461 (-) False aplp2
TU32961 other downstream 153136 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2369229 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2369526 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2370127 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2370425 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile