RNA id: TU33125


Basic Information

Item Value
RNA id TU33125
length 408
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G24623
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47770225 ~ 47771865 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagacaactctctccagtattttgaatttgtactgcagtaacaattttaattttaacaaatattcacatttcaaaAGCTGGAGCCTCAAACCTTTTGCTTGTAAATGAGGAATGACTCCAATTAAGATTAGGCAAGAGTCAATTGTCAACttttacatttactgtaaacaagCTCTCACCTTGTATGCAGTCCCTCTTCAGGTCAATGCGTTCAAGTAAGGGAATGAGGTAGGCTCCACTCTTTCCCGTGCCATTCTTAGCTCTGGCCAAGATATCCCTTCCTGACAGTGCAATGGGAATGCTTTCCTCctgaaTTGGAGATGGCTTTTCCCAGCCCATCTCAAAGATTCCCATTAGCAGCTCCCTCTTTAGGCAATAATCTTCAAACTCATTGCCTTTAGTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33082 lncRNA downstream 106230 47663754 ~ 47663995 (-) True G24589
TU33047 lncRNA downstream 195509 47574490 ~ 47574716 (-) True G24560
TU33044 lncRNA downstream 204008 47565987 ~ 47566217 (-) True G24557
TU33033 lncRNA downstream 239877 47530034 ~ 47530348 (-) True G24548
TU33002 lncRNA downstream 299246 47470389 ~ 47470979 (-) True G24523
TU33118 lncRNA upstream 4673 47776538 ~ 47792409 (-) True G24618
TU33151 lncRNA upstream 97069 47868934 ~ 47869394 (-) True G24638
TU33154 lncRNA upstream 99584 47871449 ~ 47871714 (-) True G24641
TU33157 lncRNA upstream 152923 47924788 ~ 47925044 (-) True G24644
TU33166 lncRNA upstream 179767 47951632 ~ 47951833 (-) True G24650
XM_039826284.1 mRNA downstream 3955 47761465 ~ 47766270 (-) True LOC120575471
XM_039787683.1 mRNA downstream 300763 47360113 ~ 47469462 (-) False aplp2
XM_039787665.1 mRNA downstream 300763 47360113 ~ 47469462 (-) False aplp2
XM_039787675.1 mRNA downstream 300764 47360113 ~ 47469461 (-) False aplp2
XM_039787656.1 mRNA downstream 300764 47360113 ~ 47469461 (-) False aplp2
XM_039789544.1 mRNA upstream 42674 47814539 ~ 47825418 (-) True LOC120551946
XM_039818720.1 mRNA upstream 389811 48161676 ~ 48398619 (-) False nectin1b
XM_039818736.1 mRNA upstream 389811 48161676 ~ 48398618 (-) False nectin1b
XM_039818754.1 mRNA upstream 390261 48162126 ~ 48398620 (-) False nectin1b
XM_039818727.1 mRNA upstream 390261 48162126 ~ 48398620 (-) False nectin1b
TU32961 other downstream 627676 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2843769 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2844066 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2844667 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2844965 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile