RNA id: TU33154


Basic Information

Item Value
RNA id TU33154
length 266
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G24641
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 47871449 ~ 47871714 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGCTGCAAATATggcttgaccccaaaaaaattctaacaaaagATTTTTCAGTGGTTTACAGTAGTATCAGATGTACCTAAAAACATACtaaaagtttaccaaagtttgaCTTCAAGAAAggccccattttcaaaaaggcgGCCGCGGGTCCTTAAAAAGACCATTACTCCTTTGTATTCCTACTACACCATGAACACTGGTACCTTATACATGTTTTGGCCATTTAATATTCTAATTAGCATATTTGTATGATAAATAAGCac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33151 lncRNA downstream 2055 47868934 ~ 47869394 (-) True G24638
TU33118 lncRNA downstream 79040 47776538 ~ 47792409 (-) True G24618
TU33125 lncRNA downstream 99584 47770225 ~ 47771865 (-) True G24623
TU33082 lncRNA downstream 207454 47663754 ~ 47663995 (-) True G24589
TU33047 lncRNA downstream 296733 47574490 ~ 47574716 (-) True G24560
TU33157 lncRNA upstream 53074 47924788 ~ 47925044 (-) True G24644
TU33166 lncRNA upstream 79918 47951632 ~ 47951833 (-) True G24650
TU33179 lncRNA upstream 126470 47998184 ~ 47998578 (-) True G24655
XR_005641616.1 lncRNA upstream 127454 47999168 ~ 47999633 (-) True LOC120573037
TU33182 lncRNA upstream 131021 48002735 ~ 48002944 (-) True G24658
XM_039789544.1 mRNA downstream 46031 47814539 ~ 47825418 (-) True LOC120551946
XM_039826284.1 mRNA downstream 105179 47761465 ~ 47766270 (-) True LOC120575471
XM_039787675.1 mRNA downstream 401988 47360113 ~ 47469461 (-) False aplp2
XM_039818720.1 mRNA upstream 289962 48161676 ~ 48398619 (-) False nectin1b
XM_039818736.1 mRNA upstream 289962 48161676 ~ 48398618 (-) False nectin1b
XM_039818754.1 mRNA upstream 290412 48162126 ~ 48398620 (-) False nectin1b
XM_039818727.1 mRNA upstream 290412 48162126 ~ 48398620 (-) False nectin1b
XM_039818744.1 mRNA upstream 290455 48162169 ~ 48398620 (-) False nectin1b
TU32961 other downstream 728900 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 2944993 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 2945290 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 2945891 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 2946189 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile