RNA id: TU33182


Basic Information

Item Value
RNA id TU33182
length 210
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G24658
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 48002735 ~ 48002944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatgcggcaaagtaataaatgcccgtcttggccgggtggcgatgttactgcggcctctcgggcgcatctcctcaagtctggagaggattgctgcagccatggagcgtgggcctccaaacgcaccacctgcacctgttgtgccccttcctcctccccccactccatctccgtccacccgctccaccaggagcgcatcgcgcattactcccg

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641616.1 lncRNA downstream 3102 47999168 ~ 47999633 (-) True LOC120573037
TU33179 lncRNA downstream 4157 47998184 ~ 47998578 (-) True G24655
TU33166 lncRNA downstream 50902 47951632 ~ 47951833 (-) True G24650
TU33157 lncRNA downstream 77691 47924788 ~ 47925044 (-) True G24644
TU33154 lncRNA downstream 131021 47871449 ~ 47871714 (-) True G24641
TU33184 lncRNA upstream 18508 48021452 ~ 48021812 (-) True G24660
TU33185 lncRNA upstream 45665 48048609 ~ 48049017 (-) True G24661
TU33186 lncRNA upstream 46829 48049773 ~ 48050067 (-) True G24662
TU33197 lncRNA upstream 90521 48093465 ~ 48093938 (-) True G24672
TU33198 lncRNA upstream 92461 48095405 ~ 48096396 (-) True G24673
XM_039789544.1 mRNA downstream 177317 47814539 ~ 47825418 (-) True LOC120551946
XM_039826284.1 mRNA downstream 236465 47761465 ~ 47766270 (-) True LOC120575471
XM_039787675.1 mRNA downstream 533274 47360113 ~ 47469461 (-) False aplp2
XM_039818720.1 mRNA upstream 158732 48161676 ~ 48398619 (-) False nectin1b
XM_039818736.1 mRNA upstream 158732 48161676 ~ 48398618 (-) False nectin1b
XM_039818754.1 mRNA upstream 159182 48162126 ~ 48398620 (-) False nectin1b
XM_039818727.1 mRNA upstream 159182 48162126 ~ 48398620 (-) False nectin1b
XM_039818744.1 mRNA upstream 159225 48162169 ~ 48398620 (-) False nectin1b
TU32961 other downstream 860186 47134857 ~ 47142549 (-) False bet1l
unassigned_transcript_136 other downstream 3076279 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 3076576 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 3077177 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 3077475 44925188 ~ 44925260 (-) True trnar-acg_8

Expression Profile