RNA id: XM_039776786.1



Basic Information


Item Value
RNA id XM_039776786.1
length 4116
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120543635
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8022628 ~ 8063341 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttattgtcatcggtttaatgtagcctatattttttatttttatttaagcagcTGCAGGGATAATTTTGTATGGCAAGTTAATCTCTGATTCAACGTGAACAGAAGGTGGCGCTAATTTGCATACTACACTGATTCCTTACCGCtctttggaaaaacacagacgaAGAAAAGTTTGAACAACGCAGCAAGGCGGGATGCAACAGACTGTAGGCTTGTtgtaagttttgaatgttaacATTCATTCACTTTTAGTTTAtacatgtttttatgtgtttgtctcagagAGAGTAGACCTTCTCCAAGCCCCCGCCCTTCACTGGCTTATCACGGGAGTCTTGTTGGGATTGGCAACTTGTCAGATATAGGTTAGCTGCTATAGAGCTAGCCACTTAGCGCGACCACTAACGCTACACACTccagccatagacagtatagaCTCCAGCAGCACAACTAGCGACCTACCACTCCCAGACTCACTGAAGAATTGTACAACGGATGAACGAGTCAACTGCCCGTTCCCGCCCACTTGTGTTGCGTcggttttaaaacaaatgacCCTGCTGGAGGCAAGCTGCTTTTTAtgacaaagatgaataaagtaaaaaccCTTAACAGTAAAGCTTTGGTTTGTAGAAATGGCATTATTGTTGATTAACAATGCAGTAAGGTTCAAGTGtggctgcttttctttacagtaatgttaattttgTTTAATGGCTTTAGTAACTTGACACTTTGGGGCTCAAATGAAAAGATCATTAACAGggaacatttataaatggaagtatttatgatttgacactctttgaatgcttttaatTGTTCAGTTTCATATCAGTTTATGCCTTTGCATCTTGCTGTTCCAGTTTCAAGAAGTTAAGGAAGATAACTGGAAATGTGATAACGATACCAGATGATGGAGACCATATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACATCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCACCATCTTCCTCTAATGATGACCTTATTCAGACAGAAGGCACCAATAACTGGGAAGACAGCAGATGCTCTGgctgaaatttaaaaaatccacgatgaacagGAACCAAAAATGGCAACGCCTAAAGAAGTCGTCTTAAGAACTTTACAAGACTTGGGAGCTGAGGATTTTGAAACATTCCACTGGTACCTACAGCTGAATGGCGGCCTTGAAGATTTCCCAGCAATCCCAAAGAGCAAACTGGAGAATGTAAACAGGGTGAAGACAGTGGACCTGATGTTCTCAACCCACAGTGTGAACACCATTAATGTGACCAGAATAGTTTTAGTGAAGATGAATCAGAATGAGTTAGGGAAGAATTTATCAAATTTATCAAACACCATCTCAGAACCTACAAATATTCTTGCTTCATGCCAGCAAAAAGTCAAATCCAACTCACAAaagaagttccagtgtgtgtttgaggggattgctaaagctGGAAACCCATcccttctgaatcagatgttcacagagatctacatcacaGACGGTGGGGCTAAAGAGGTCAatgatgaacatgaggtcagacagattgaaacagcatcctggagaccagacagaccagaaacaacaatcagatatgaagacatctttaaaactccacctggaagagatgaaccgatcagaacagtgatgactAAGGGAGTcgctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttaCATTCgctttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttcatTACTTCTtcagtgaaaccaaagaagcaggaatctacAGCTTTGAAGAGTTCccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactaaaatcctgactgatgttacagagtccacctcagtgggtgtgctgttgacaaacctcatcagggggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagattcctcctgagtgtgttgacatggtgacagaggtcagagggttcactgaccctcagaaggaggagtacttcaggaagagattcagagatgaggagcaggccaacagaatcatctcccacatcaagacatcacaaagcctccacatcatgtgccacCTCCCaatcttctgctggatcactgctacagttctggaggacaTGTTGAagagcagagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaacGGAAGAATGTCAAGTATGATGGAAAATTTGAGACTGATCCACACTGGAGTGAAGAGAACAGGAAGATAATCGAGTCCCTGGGAAAACTGGCCTTTGAGCAGCTTCAGAAAGGCAACCttatcttctatgaatcagacctgacagagtgtggcatcaACATCacagcagcctcagtgtactcaggagtgttcacgcagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctgtTCATGTCCACCTGACATTCaccaactctggagtcaacctgctATTGGAGAATTGGAAAACAACCTGGTTGTCTAAAGTCTTCAGAGACAAATCGGAACAAACAACATCAGCACAGTTCTACCAAagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgccttctcctgggtctttcactggAGACCAATCAGACTCTCCTACGAGGTCtgctgacacagacaggaagtacgTTTGAGGCAAACAAGAAAACAGTTGAGCACATAAAGAAGAAGATTAATCagaatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatcattctctagtggaggagatccaacagtccctgacatcaggaagtctctccacaggtaaactgtctcctgctcagtggtcagctctggtcttcatcatACTGTCTTCAGAGAAAGATCTGGAcatgtttgacctgaagaaatattGTGCTTCAGAGAAGGCTCTTCTGAtactgctgccagtggtcaaagcctccaacaaagctctGTTAAGTGGCTGTGAACTCTCTGAGACAAGTTGTGAAGCCCTGTcgtcagttctcagctcccagtcctccagtctgagagagctggacctgagtaacaacggcCTGAAGGATTCAGGAGCGAAGCTGGTGTCTCCTGGACTGAAGAGTCTAAactgcagactggaaactctcagACTGAGTGGCTgcaacctgtcagagagaagctgtgaagatctatcctcagttctcagctccaggtcctccagtctgagagagatggacctgagtaacaacgacctgaaggattcaggagtggAGCTGGTGTCTGCTGGACTGAGCAGttcacactgcagactggaaactctcagtctgtcaggctgtatGATCTCAGAGAAAGGCTGGATTACTCTGGCCTCAGCTTtgagctccaacccctcccatctgaaggagctggacctgagctataatcacccaggagactcaggagtgaagctgctgtcAGCAGGACTTAAGGACCCTAACTGgagactggaaactctcagGATGGACCATGGTGGACCGCAGAGGTTGAAACCTGGTCTgaggaagtgtggaggaggtggagatttgagaagcGCTATGCACGGGAGGTCCGGTCCAGAGACGGATATTGGATCACATTGATTCTTCAGATCCCAGAGTCTTCCAGGGGTTACTGATTCCCAGTTCAGTTTGCTGGGTGGCAGCTACAGGATCAAGACTCAGAACTTATACGGATTGCCCTGGATTCCTTCTTcatggtggtaggacaaacagaaaccaaactcatatgggccccaacgttgaacatctctcaactcttgtca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU20717 lncRNA downstream 122508 7872052 ~ 7900120 (-) True G15353
TU20673 lncRNA downstream 124724 7884862 ~ 7897904 (-) False G15339
TU20683 lncRNA downstream 124724 7884862 ~ 7897904 (-) False G15339
TU20722 lncRNA downstream 135696 7886560 ~ 7886932 (-) True G15356
TU20701 lncRNA downstream 149565 7859745 ~ 7873063 (-) False G15346
XR_005636436.1 lncRNA upstream 8251 8071592 ~ 8072887 (-) False LOC120544065
XR_005636435.1 lncRNA upstream 8251 8071592 ~ 8072887 (-) True LOC120544065
TU20776 lncRNA upstream 56174 8119515 ~ 8125709 (-) True G15403
TU20785 lncRNA upstream 73960 8137301 ~ 8141402 (-) False LOC120551075
TU20787 lncRNA upstream 73960 8137301 ~ 8140775 (-) True LOC120551075
XM_039788203.1 mRNA downstream 36201 7983094 ~ 7986427 (-) True LOC120551059
XM_039788182.1 mRNA downstream 307591 7712652 ~ 7715037 (-) True LOC120551046
XM_039777416.1 mRNA downstream 513483 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 610121 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 610981 7398193 ~ 7411647 (-) True LOC120543849
XM_039777191.1 mRNA upstream 15883 8079224 ~ 8098464 (-) True LOC120543856
XM_039788227.1 mRNA upstream 74683 8138024 ~ 8155303 (-) False LOC120551075
XM_039777235.1 mRNA upstream 306428 8369769 ~ 8392277 (-) True LOC120543874
XM_039776935.1 mRNA upstream 559141 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 619322 8682663 ~ 8684484 (-) True LOC120543940
unassigned_transcript_85 other downstream 86301 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 512557 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 682020 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 814337 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 886524 7129626 ~ 7136104 (-) True rpl35a
TU20786 other upstream 73960 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 405016 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 538731 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 790971 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 797020 8860361 ~ 8860640 (-) True LOC120554461

Expression Profile


XM_039776786.1 Expression in all Baseline Samples

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XM_039776786.1 Expression in each Bioproject

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XM_039776786.1 Expression in each Sample
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