RNA id: XM_039776975.1


Basic Information

Item Value
RNA id XM_039776975.1
length 2426
RNA type mRNA
GC content 0.57
exon number 21
gene id atg16l1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8849490 ~ 8880046 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGCGACCTTCCAGGAAGTAGGACTGCGAGCTGGAGCCGTGCGGTAGATGATGTCGTTAAAGAAGAGAAACGGGACCTTTAAACACCGAACACCGTGAGAATCACCGACCGAGGCCACCGGGGCACCGGTAGAGGAGACGAGCCACAGTCCGGGACCCAGTTAGATGCTgtggTCATGGCTGAGCGGAGGGTGGAGTGTACGTGGAAGAGACACATCTCGGAGCAGCTGAAGCTCAGAGACCGAGTCCAGAGACAGGCCTTCGAGGAGATCATCCACCAGTataACCGACTGCTGGAGAAGTCAGACCTGCAGGCTGTCCTATCAGAGAGATACCAGACAGACAAGTATGACGTCCAGAGGGGACACGAGGCCGGGTCGGGGACAGACTCCAGTCGTAGTGATGCCCTGCAGCAGGAGATGTCTCAGATGAGAATCCGACACCAGGAGGAGCTGACGGAGCTGCACAAGAAACGGGGAGAGcTGGCTCAGAGTGTGATCGAACTGAACAACCAGATTCAAATGAAGGACAAAGAGATCCAGAGCAATCAGGCcaggaTGTTGGAGTACCAGCAGCAGATGGCCAGTCTGGAGGTAGACTGTCGGGAGCTGAGGAACTTCCTGCAGGACCTGGAGAGAGCcaatcagacgctgaaggacgaGTACGACGCGCTGCAGATCACCTTCTCAGCGCTGGAGGAGAAGCTGCGTAAGACCACCGAGGACAACCAGGAGCTGGTGTCCCGCTGGATGGCCGAGAAGGCTCAGGAGGCCAACAAGCTCAACGCTGAGAACGAGAAGGacagcagACGCAGACAGGCCAAGCTGCAGAAGGAACTGGCCGACGCAGCCAAAGAGCCTCTACCTATCGACCCagacGATGACATCGAGGTTTTGGCGGAGGACGGAGGGAAAGGAGGTGGCGGTGGTGGTGAGACGTCTCCCAACAGACCGCTGAGCAGAACTCCCAGtaagAAGAACTCTCAGCCTCCTCCGGCCGGTCTGCTGGACTCCATCTCCAACATATTTGGagtGTCTGAGTGTGTTGATCCTGGACTGGTCTCAGCTCCCTGCagGCGTCGCCCTGGAAACGCTTTCAACACGTCTCCTGAAAACACAGAAGCTCCTTCAGGAGTGTGTGCCGAGGTTCGAGTCCCGTCCACGGCGCTGCACGTCTTCgATGCCCATGACGGCGAGGTGAACGCCGTGCGGTTCAGCCCCGGCTCTCGTCTCCTAGCAACAGGAGGGATGGACCGGAGGGTTAAGCTGTGGGAGGTCGTGGCCGGTCGCTGTGAGCCGAAAGGAGCTCTGACCGGCAGCAACGCTGGAATCACCAGCATTGAGTTTGACAGCGCTGGCTCGTACCTGCTCGCGGCCTCCAATGACTTCGCCAGTCGGATCTGGACCGTAGACGACTACAGGCTGAGGcatACGTTGACAGGTCACAGTGGGAAGGTGCTGTCCGCTCGCTTCCTATTGGACAACGCTCGAATCGTCTCCGGGAGCTACGACCGAACACTCAAACTCTGGGACCTGCGCAGCAAAGTCTGTATGAAGACAGTGTTTGCCGGCTCCAGCTGTAATGACATTGTGTGCACGGAGCAGTGTGTGATGAGTGGACACTTTGATAAGAAAGTTCGGTTCTGGGACATCAGggctgAGACCATAGTCCAGGAGCTGGAGCTGCAGGGCAGGGTGACCTCTCTGGACCTGAACCACGACCGGACCGAACTGCTCAGCTGCTCCAGAGACGACCTGCTCAAGATCATAGACCTGAGAACCAACGCTGTCAGACACACCTTCAGtgCTCCAGGCTTTAAGTGTGGCGCTGACTGGACCAGAGTAACTTTCAGtcctGACGGTAGCTATGTGGCCGGAGGATCAGCTGACGGAGCTCTCTACATCTGGAACGTTCTGACGGGGAAAGTGGAACGAACTCTGGACCGGAACCACAActCGGCCATCAACTCGGTGTCCTGGTCTCCTTCAGGAGCCTACGTCGCCAGTGTGGAGAAGGGCAGCAAGGCCGTCCTCTGGTCGGACATGTGATTGGCCGAGACCCAAGGAGATGGGCGGAGACAGAGACGGGTGGAGACAGAAGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGACGGGTGGAGACAGCCAGGCTGAGATGGGGGGAGACAGAGcaggatgtttgtgtgttggcTGAGACGGGTGGAGACAGAACGGAGACGGGTGGAGACAGAGCAGGACGTTGGTGTGTTTTGTGGACGATGAGACATTTGATGAActcggacagacagacagagacgatGCTGTCGCTCAGCTTCAATCTGACCTTTCTCTTTTATTTCAGAGAGGAATCAAACACACCCAGAGTTAATAATAAAGGCTTTATTAACCCTAA

Function

GO: NA

KEGG:

id description
K17890 ATG16L1; autophagy-related protein 16-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21444 lncRNA downstream 47512 8801446 ~ 8801978 (-) True G15826
TU21432 lncRNA downstream 70948 8778030 ~ 8778542 (-) True G15819
TU21422 lncRNA downstream 98542 8750411 ~ 8750948 (-) True G15812
TU21419 lncRNA downstream 105144 8735489 ~ 8744346 (-) True G15809
TU21428 lncRNA upstream 392 8880438 ~ 8912301 (-) False spint2
TU21453 lncRNA upstream 4810 8884856 ~ 8885515 (-) True G15832
XR_005636446.1 lncRNA upstream 5880 8885926 ~ 8886911 (-) True LOC120544086
XR_005636433.1 lncRNA upstream 14738 8894784 ~ 8896382 (-) False LOC120544051
XR_005636432.1 lncRNA upstream 14738 8894784 ~ 8896380 (-) True LOC120544051
XM_039777139.1 mRNA downstream 8114 8828413 ~ 8841376 (-) True LOC120543840
XM_039778440.1 mRNA downstream 107447 8692074 ~ 8742043 (-) True LOC120544569
XM_039777372.1 mRNA downstream 165006 8682663 ~ 8684484 (-) True LOC120543940
XM_039776935.1 mRNA downstream 211403 8622482 ~ 8638087 (-) True LOC120543728
XM_039777235.1 mRNA downstream 457213 8369769 ~ 8392277 (-) True LOC120543874
XM_039777012.1 mRNA upstream 430 8880476 ~ 8914977 (-) True spint2
XM_039777467.1 mRNA upstream 41390 8921436 ~ 8923366 (-) True LOC120543996
XM_039776768.1 mRNA upstream 250938 9130984 ~ 9158835 (-) True LOC120543625
XM_039788278.1 mRNA upstream 315941 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 468163 9348209 ~ 9433655 (-) True eif2a
TU21363 other downstream 246600 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 379730 8468357 ~ 8469760 (-) True G15757
TU20786 other downstream 708715 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 913163 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 1339419 7510000 ~ 7510071 (-) True trnag-ucc
TU21433 other upstream 91868 8971914 ~ 9046433 (-) True G15820
TU21489 other upstream 251493 9131539 ~ 9144120 (-) False LOC120543625
TU21546 other upstream 357921 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 550815 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 633458 9513504 ~ 9517970 (-) False LOC120551129

Expression Profile