RNA id: XM_039777059.1


Basic Information

Item Value
RNA id XM_039777059.1
length 1710
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120543803
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9309199 ~ 9315322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAAGAGACGCACCGACAGACAGAAGctGCTCTCAGAGACAAAATGGCTTCCATGTCAGAGGAGGATTTCTGCTGTTCGGTCTGTCATGAAGTCTTTAGAGATCCTGTTGTTCTGTCatgtagccacagcttctgtaaagACTGTCTGAAGAGATGGTGGACAGAGAAACAGGCACAGGAGTGTCCAGTTTGTAAGAAAAGATCTTTGTTTGAACCACCTCGTAACCTGGAGTTGAAGAAGCTGTGTGAGACTTTCTTACagcagagagatcagagagcttcagaggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccagtgtgtCTCGTCTGTCTACATTCAGAAAAACACTCCAACCACACAATCAGACCCATAGATGAAGCTGCAGAGGATCACCGAGAGGAGCTCCAGGAAGCCCTGAAGCCCTTACAGGAGAAACTGAAGCTCTGTCAACAAGTTAAAGAGGAGTGTGATCAAACAGCAGAACACATGAAGGTCCAGGCCCAACGCACAGAGATGCAGATTAAGGATCAGTTTAAGAAGCTTCACCAGTttctagaagaggaagaggaggccaggatggctgcactgagggaggaagaggagcagaagagtcagaggatgaaggagaagatggaggctctgagcagagagatagcagctctttcagacacagtcagagccacagaggatcagctgagagctgaagacgtctcattcctgatcaactacgaggctgcagtggaaagagtccagcagagccccctgctggaggatccacagctgctctcaggagctctgatagatgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacatggtctcctacactcctctggttctggacccaaacactgctggtccagaactcatcctgtctgaagatctgaccagtgtgagactaagaaaggaggaggagcagcttCCTGATAATCCAGAGAGAATTGATTATTACTGCTCTgtcctgggctctgagggctttaactcagggactcacagctgggatgTCGAGGTTGGAGACAGTACATGCTGGGAACTGGGTGTGTTACCAGAGTCTGTACAGAGGAAGGGAGACATACAGTCTGAAATATGGACAATATGGTTCTCAGGTGGTAAATACTCAGCAGTGTCTCCGTCAGCTCCACGCACTGATCTCCCGTTTGAGAAGCAGCACCAGAGGATCCGAGTGACTCTGGTCTGGAACAGAGGAAAGCTGTTGTTCTCTGATCCTGATActaagacacacatacacaccttcacacacactttcactgagaagATGTTTCCATTCATTAACACTGTTGGCAATCTGAAGATATTACCATGGAAGGTTTGTGTAAGAAAACAACAGATCTGATAGAGTCTGTAGTTTTAGGGTGGTGATAACAACTATTCACTTCTTTAAACGTTAATGTGTTCCATCTTTTTATGAAGAAATAATATCTGAAGTGAAtgataaaattaattaaaacttTATATCTGCAGCAGCAAACAGTAACAGGAGTCAGCAGATTAAATATGAAAGAATATAAACAGAATAATGGTTAATTGCTCTGTTAAAGACGTAGTATACGATACTGAGCTTTATCCCAAGTTTTAgttctttttcaatgtttttgttgcctttgttTGATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21079 lncRNA upstream 35363 9258426 ~ 9273836 (+) True G15575
XR_005636455.1 lncRNA upstream 75234 9229697 ~ 9233965 (+) True LOC120544104
TU21060 lncRNA upstream 133394 9172832 ~ 9175805 (+) True G15571
TU21055 lncRNA upstream 189844 9118637 ~ 9119355 (+) True G15567
TU21036 lncRNA upstream 217231 9082032 ~ 9091968 (+) False G15552
TU21064 lncRNA downstream 26761 9342083 ~ 9349088 (+) False G15572
TU21067 lncRNA downstream 26761 9342083 ~ 9354628 (+) False G15572
TU21068 lncRNA downstream 26761 9342083 ~ 9349979 (+) False G15572
TU21118 lncRNA downstream 96168 9411490 ~ 9438829 (+) False serp1
TU21119 lncRNA downstream 96168 9411490 ~ 9438829 (+) False serp1
XM_039788297.1 mRNA upstream 7938 9283464 ~ 9301261 (+) True LOC120551113
XM_039777153.1 mRNA upstream 33767 9259077 ~ 9275432 (+) True mindy4b
XM_039776753.1 mRNA upstream 230643 9036536 ~ 9078556 (+) True LOC120543609
XM_039777493.1 mRNA upstream 500224 8796360 ~ 8808975 (+) False LOC120544007
XM_039777085.1 mRNA upstream 688091 8581479 ~ 8621108 (+) True LOC120543817
XM_039777044.1 mRNA downstream 9641 9324963 ~ 9329512 (+) True LOC120543792
XM_039777024.1 mRNA downstream 16245 9331567 ~ 9339168 (+) True LOC120543784
XM_039777519.1 mRNA downstream 119327 9434649 ~ 9438831 (+) True serp1
XM_039788344.1 mRNA downstream 228697 9544019 ~ 9554616 (+) True LOC120551143
XM_039783389.1 mRNA downstream 287938 9603260 ~ 9625781 (+) True LOC120547748
TU21053 other upstream 186907 9113842 ~ 9122292 (+) True G15565
TU21035 other upstream 226791 9040559 ~ 9082408 (+) True G15552
TU21037 other upstream 226791 9040559 ~ 9082408 (+) False G15552
TU21033 other upstream 267896 8994181 ~ 9041303 (+) False G15552
TU21004 other upstream 378929 8926592 ~ 8930270 (+) True G15540
TU21111 other downstream 58832 9374154 ~ 9378204 (+) True G15605
TU21147 other downstream 143156 9458478 ~ 9459217 (+) True G15628
TU21177 other downstream 283638 9598960 ~ 9669529 (+) True G15640
TU21174 other downstream 316069 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other downstream 318982 9634304 ~ 9636479 (+) False LOC120551159

Expression Profile