RNA id: XM_039777099.1



Basic Information


Item Value
RNA id XM_039777099.1
length 2007
RNA type mRNA
GC content 0.55
exon number 8
gene id rnf168
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8547618 ~ 8566587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGTTAACAGTTCATTCACGCGGGTGTTCAGTAGCAGTAGTCTCCGGTGAATCTCCGGTAAAGTTTACGGTTAGCTGTTAGCAGGAATGTGCTAACTGTTAGCCATACACAGTCAGTGCAGTTTACACTGTTAGCTAACGGGTAGCTAACGGTTAGCTAGGCCTGTCGCGGTTTGACGTTAGCCAGGGAGCTAACTTGACTTGTTGTTAGCTAACTTAACTTTAGCATCAACGTCTGTTTACCCCAGTACAGGCTGATCAGCTGACTCTCCGTGCccaccacagaagaagaagaggaagaggatggTGTCAGacagaggaggggggaggaagagagggggggcgGCTGAGCTGTCCCGGGACGACTGTCTCTGTCCCGTCTGTCTGGAGATCTTCATGGAGCCGGTTACTCTGCCCTGCACACACTCCTTCTgcaagGTCTGTTTCCTGGAGTCCGTGGACAAGGCCACCCTGTGCTGTCCCCTGTGCAGGAAGAGGGTCTCTACGTGGGCTCGTCTCCACAGCCGGACCAACACGCTGGTGGACCAGAACCTCTGGACCAGGATCCAGACCGCCTTCCCTCTGCAGTGTCAGCGGAGGCTCAACGGCCAGGACGCAGAGCCAGACGGACCtggagtatcAGTGTGTTTCCCCAGAGTGAGTGAGCCTGGAGAGCTGAAGCAGGAATACGAGGAACAGGTCACTAAACTGACGGAGGAGAAGAGAGCTCTAGACGAGGAGGAGGCCAGGGCCAGCCAGGAGTTGATCCAGAAGCTTCTGGCTGAGGAGCAGAAGATGGTCCaggaggagatgaagaggagagaggaggacgAGAGGCTGGCTCGCCTGCTCAGCTCTCAGCTGAACTCCGGTCCGGTCTCTCAGGAGAACTCTGGTCCTGTTAACGCCACTCCAgccaagaagaggaagaaggaggtcAGCGGACAGATGGACCGgtTCTTGTGTCCTCTTCCATCTAACAGCATGTTTACAGCCAACAAGGTGGATCAGCCCCTCCCCAAACTGGATTACTACGGCGCTGTGACAGAGCCCCCCTCTCACAGACcagcccctcctcctctctctgtggaGGAGGACCTTCAGCTGCCTGCAGCAGGACGGCCGGGGTCCAAGAGGAAGAGCTCGGAGCTGGAGGCGGTCtgtccctcttcctcctcctcggccCTGCAGGAGGTGTCAGAGGGGGGGCTGTCAGACTGGGGGGTCAGACTGGGAGGTGCAGCTCCAGAGCAGACGGCTGCAGGAGGAGCAGGACCGGCAGCTGGCCCTGCAGCTCCAGAAACAGCTGGACCAGGAGGAGAAACGGAGGGCTACGAACCGAAGCAAAGGCTCCTCAGACCAGTACCTGCTCCGCCCAAACCTCTGCAGACAGACCTCCTCCAGTGCCTCAGCCACCACCCGTACAGCCTCCTCCACCCCTTCATCTGCAAAGACTACAACCTCTGCAAAGACTACAACATCTGCAAAGACTACAAACTCTGCAAAGACTACAACCTATGTAAAGACTACAGCGTCCAGcagccccagcagcagcagcagaggcagTAAACAGACGACTCTGACGGAGATGTTCTCCAGCAGCTGAACTCTGACAGACCTCGTTAAAGCTGCTTTCATTTCCTTTTAGTTCCCCTGGAGACGCTACATGGCCAGCTGATGGAGCagcctggtcctggtcctggtccagAGCCCCTCGGGGGTCAGACCGGCCCACATGTCTGTGTGGACCAGGATTCAGACAGTGCTCCTACTGATCTTTGAGGACACGTTGGGTCTCACCAGGAATCTGGTTTAGTTTCAGGGTCCCCCCGTCTGTaaacttgttttaaataaagttttgggGCCGTCAGACTTTACGGAGAATCTTAATTTTCGGGACTTCTTCAGGGGACCCAAACTAATCACTTTGTTAATCAAAAGTATTTCTgaattcattttcaaaatatctgatttttttttatgaaaataaaccctttttttctaaata

Function


GO: NA

KEGG:

id description
K20779 RNF168; E3 ubiquitin-protein ligase RNF168

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005636438.1 lncRNA upstream 12877 8531244 ~ 8534741 (+) True LOC120544074
XR_005636439.1 lncRNA upstream 12877 8531244 ~ 8534741 (+) False LOC120544074
TU20928 lncRNA upstream 43464 8503817 ~ 8504154 (+) True G15487
XR_005636449.1 lncRNA upstream 64324 8482230 ~ 8483294 (+) True LOC120544094
TU20890 lncRNA upstream 69200 8478169 ~ 8478418 (+) True G15471
TU20941 lncRNA downstream 13284 8579871 ~ 8602270 (+) True G15497
TU20942 lncRNA downstream 19796 8586383 ~ 8596399 (+) True G15498
TU20943 lncRNA downstream 20690 8587277 ~ 8638423 (+) True G15499
TU20894 lncRNA downstream 54267 8620854 ~ 8621654 (+) False LOC120543817
TU20896 lncRNA downstream 54267 8620854 ~ 8621654 (+) False LOC120543817
XM_039776897.1 mRNA upstream 77858 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 125282 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 240408 8244631 ~ 8307210 (+) True LOC120551081
XM_039777293.1 mRNA upstream 421949 8123625 ~ 8125669 (+) True LOC120543907
XM_039788213.1 mRNA upstream 428972 8115385 ~ 8118646 (+) True LOC120551067
XM_039777085.1 mRNA downstream 14892 8581479 ~ 8621108 (+) True LOC120543817
XM_039777493.1 mRNA downstream 229773 8796360 ~ 8808975 (+) False LOC120544007
XM_039776753.1 mRNA downstream 469949 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 692490 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 716877 9283464 ~ 9301261 (+) True LOC120551113
TU20798 other upstream 375127 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 375843 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 703961 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 703961 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 703961 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 229483 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 229483 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 229497 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 282914 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 360005 8926592 ~ 8930270 (+) True G15540

Expression Profile