RNA id: XM_039777167.1


Basic Information

Item Value
RNA id XM_039777167.1
length 1419
RNA type mRNA
GC content 0.61
exon number 6
gene id LOC120543849
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7398193 ~ 7412507 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAGTGCAGTTCAGACATGTTCAGACATGTACACACATGTACGCGCACACTCAAACTACAGTGTCACGCGATAATGCGTCAGTTTTAAATGACTCAGTTTCACTTCAGTTTTCACTTGGACAGGCTTTAACTTTACAGTCGACATGAGGAAGCAGCTCTCAGCAGcagaccagaaccagaaccagaaccccGTCATCCCAAAGGTCCGATACCACCCGAGCATCCAGACCCCCCACACACCCAGACCCAGAGAGACCCAGAGGCCCGGACCGGCCACCGTGGGCCCCCCAAAGACTGGACCCACCGTGGGCCCCACTCAGACTGGAACCAGAGTGCGCCCCCCTAAGACTGGACCCAGCGTGGGACCCCCTAAGACTGGAACCAGAGTGGGACCCCCTAAGCCTGGGCCTGGACCGGCTCGGGTGGATCCAGCCCGCCCTGACGGAGATGCCGATGCGGGCCCAGACCGGGCCTCCCTGAGCCCGGACCAGGTTCCTCTGGGTCTGGGTCTGCAGGTGGACCACCAGGTGGTGCAGCAGGTGGAGATTCTTACCCGCGGACAGAGCAGCAACCAGGACTGGTTCACCTGGAGGAAGAACCGCATCACGGCCTCAGTGGCTCACCGCATCGCTCACTGCCGCTTCGTCAACGGCAAGAGCAAGGCCCCGCCCCCTTCCTACCTGGCTGCTGTCACAgGTGAGGGGCGGCACATCCAGACCAGAGCCATGTCCTGGGGGGTCAACATGGAGGCCAAGGCGGTCCGCAGGTATCAGGAGATGAAGAGCGTGGCGCTGGGCCGGTCCGTCACCGTGCAGTCCTGCGGTTTGTTCCTGGACGAGCGGCGCCCCTGGTTGGCTGGGAGTCCCGACGGCATCGTGACGGACAGCCACACCGGCCAATGGCTGCTCTGCCTGGAGGTCAAGTGTCCGTACAAACACCGGCAGCGTACGGTGGAGGAGGCCTGCAGGCAGGACCCGGCCTTCTGTCTGGAGATCACCCACCATACGCCCCCGGCGGCGTCCCCCCCGGCGTACCGTCTGAAGACGTCCCACAGCTACTACACCCAGATCCAGGTGCAGCTGGCGGTGACGGGGCTGCGTGACGCTGACCTCGCCGTGTTCACGCTGAAGGAGCTCGCCATCGTCcccgtgacctttgaccccgcCCTGTGGGACGCCACGCTGTCCAAGCTGGAGACGTTCTACAGAGACGCCGTGCTGCCCCACCTGAGACAGGACTCGCAGCAGCAGGCGCCAGAGCTGTAGagacattacccacaatgcagcTGGGTGTAGATACAGGCGTGTCAGAGATATAGATCAGAGTGGAAGGGTTAGGGGTCCTTCCTCTAGAAAATTTTACgttctatatttttttaaacacacagagacgcacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20463 lncRNA downstream 41685 7354804 ~ 7356508 (-) True G15212
TU20459 lncRNA downstream 67273 7327696 ~ 7330920 (-) True G15209
XR_005636458.1 lncRNA downstream 186827 7207740 ~ 7211366 (-) True LOC120544114
XR_005636457.1 lncRNA downstream 189465 7207740 ~ 7208728 (-) False LOC120544114
TU20433 lncRNA downstream 241554 7155520 ~ 7156639 (-) False LOC120543599
TU20477 lncRNA upstream 34511 7446158 ~ 7461790 (-) True G15226
TU20478 lncRNA upstream 35054 7446701 ~ 7459539 (-) True G15227
TU20487 lncRNA upstream 79739 7491386 ~ 7492016 (-) True G15235
TU20607 lncRNA upstream 86378 7498025 ~ 7498806 (-) True G15300
TU20608 lncRNA upstream 94300 7505947 ~ 7572179 (-) True G15301
XM_039780074.1 mRNA downstream 54300 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 130479 7262974 ~ 7267714 (-) True LOC120544032
XM_039776743.1 mRNA downstream 198654 7142729 ~ 7199539 (-) True LOC120543599
XM_039777444.1 mRNA downstream 262031 7129789 ~ 7136162 (-) False rpl35a
XM_039776961.1 mRNA downstream 271795 7117919 ~ 7126398 (-) True LOC120543742
XM_039777416.1 mRNA upstream 83386 7495033 ~ 7509145 (-) True polr2d
XM_039788182.1 mRNA upstream 301005 7712652 ~ 7715037 (-) True LOC120551046
XM_039788203.1 mRNA upstream 571447 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 610981 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 615758 8027405 ~ 8063338 (-) True LOC120543635
TU20455 other downstream 57585 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 189902 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 262089 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 278152 7114719 ~ 7120041 (-) False LOC120543742
TU20324 other downstream 284585 7111699 ~ 7113608 (-) True G15114
unassigned_transcript_84 other upstream 98353 7510000 ~ 7510071 (-) True trnag-ucc
unassigned_transcript_85 other upstream 524609 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 725654 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 1056710 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 1190425 8602072 ~ 8602890 (-) True G15771

Expression Profile