RNA id: XM_039777191.1


Basic Information

Item Value
RNA id XM_039777191.1
length 1387
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC120543856
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8079224 ~ 8098464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtaaaattTCCTAAAGCTTTttattgtctgtgtgttcttgactttaatggacctgacagaaatTGAGCGTCAGCGTCAGTCCTGGCAGGCCAAGTAGTCAAGATGCCGCTAAACGCTATTGGCCAACAACACggtctcatcagctgatctgcatCAGCTGGTCAACTCCCCTCACTGCTAATAGGCTATGCTCAAACAGGGCGCCTTACTTAAAGCTGCATCAGTTTGCTCCTAATTTATTGCTGTTTTAGTGCTTGCAGCTTTATTTTGCTCTAACTGCTTGCTGCTCGCATCGTGCTACCCACCTCCTCCCCTGCTCCATCTTGTCGTAAGAgTGAACTATGGCCCAGTTTGTTGAAGACTCCAGCCTGGAGGACTGGGAGGAGATTGGCTCCGGGGGTTTTGGACAAATCTACAAAGCCAGGCATCATCAGTGGGGCATTGACGTAGCCATTAAAGTGCTTCTTAAGGACGAGGGgtCTTTGCTGCATGAGATCAATATGATGCATCAAGCCACCAGCCCGCATGTTATGGCCGTCCGAGGGATCTTCAAGGGTCGAACACCCTTTTCTGGCAGGTCAACAAAGCTTGGTGTGGTCATGGAGCTCATGAAGAGAGGATCATTGGCCTCCCTACAGGCAGCATTGAGGGGAACTCCACCCTGGCCGCTGGTCTTCAGACTGGCTCACCAAGTGGCTCTGGGTATAAACTACCTCCACAGTCTGCCCCGTCCTGTGCTCCACCAGGACCTGAAGCCCCAAAACGTGCTGCTGGACGATGCTCTCAATGCCAAGCTTACAGATTTTGGCCTTGCCCAGACTTCCTGCAGCATCACACTGGTTTCCAAGGACAATGGACCACGAGGAGGGACGCCTTACTACATGCCACCAGAGGCTTTTAACCCATCATACAGACCTTCCAGATCCTTTGATATCTACAGtTTTGGGATACTCCTTTGGTCCATTGTCACAGGGAAACAACCTTATGAAGTGGAGGGAGACCTCCCAAACCTGGATGATATCAAGGGCGATGTTGCCGGGTTGAGAGAGTTGAAAGAACTGATGAAGAGATGCTGGGATCCTAAACCTGAACAAAGGCCTAAAGCCCTTGAGTGTACAACTGAGACAGAACAACTGTTCAAGATGCACGAACATGAACTCAATAAAGCTGTCTATGAAGTGCTGATGAAACTGgaccaaaaggaaagaaaaggcaTGGCAGCAGGAAAGAAGGTTCGGAGGGATCAAATCGCTAAGGCTTCAGTGAAGGGGATCCAACAGGCAATGGGAAGATTGAGTCTGCCTCCTCTGGACCCTCTCAGGGTCCAGAGACGTGATCTGATGAGATattcctgtgaactcacactggacacaaacacagtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636436.1 lncRNA downstream 6337 8071592 ~ 8072887 (-) False LOC120544065
XR_005636435.1 lncRNA downstream 6337 8071592 ~ 8072887 (-) True LOC120544065
TU20717 lncRNA downstream 179104 7872052 ~ 7900120 (-) True G15353
TU20673 lncRNA downstream 181320 7884862 ~ 7897904 (-) False G15339
TU20683 lncRNA downstream 181320 7884862 ~ 7897904 (-) False G15339
TU20776 lncRNA upstream 21051 8119515 ~ 8125709 (-) True G15403
TU20785 lncRNA upstream 38837 8137301 ~ 8141402 (-) False LOC120551075
TU20787 lncRNA upstream 38837 8137301 ~ 8140775 (-) True LOC120551075
TU20789 lncRNA upstream 38837 8137301 ~ 8140775 (-) False LOC120551075
TU20828 lncRNA upstream 156409 8254873 ~ 8255584 (-) True G15428
XM_039776786.1 mRNA downstream 15883 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA downstream 15886 8027405 ~ 8063338 (-) True LOC120543635
XM_039788203.1 mRNA downstream 92797 7983094 ~ 7986427 (-) True LOC120551059
XM_039788182.1 mRNA downstream 364187 7712652 ~ 7715037 (-) True LOC120551046
XM_039777416.1 mRNA downstream 570079 7495033 ~ 7509145 (-) True polr2d
XM_039788227.1 mRNA upstream 39560 8138024 ~ 8155303 (-) False LOC120551075
XM_039777235.1 mRNA upstream 271305 8369769 ~ 8392277 (-) True LOC120543874
XM_039776935.1 mRNA upstream 524018 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 584199 8682663 ~ 8684484 (-) True LOC120543940
XM_039778440.1 mRNA upstream 593610 8692074 ~ 8742043 (-) True LOC120544569
unassigned_transcript_85 other downstream 142897 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 569153 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 738616 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 870933 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 943120 7129626 ~ 7136104 (-) True rpl35a
TU20786 other upstream 38837 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 369893 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 503608 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 755848 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 761897 8860361 ~ 8860640 (-) True LOC120554461

Expression Profile