RNA id: XM_039777235.1


Basic Information

Item Value
RNA id XM_039777235.1
length 2166
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120543874
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8369769 ~ 8392277 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCGTCCAGCCCGCAGGAACAGAACCGGGAGCAGAAAGAGGAGCAGAAAGAGGAACAGAAAGAGGAGcataaagaggaacagaaaGGGGATTTGAAGGAAGAGGAGGTGAAGAAAGACGTGAAGCCGGAGGACAAACAGAATCAAAATGAGGAGAGGAAAACAGAGAAGTGGGAGGAAAACAAGAAAGAAGAGCCGAAGGAATCCTGGAAGGATTGTATCTACAACCCAAGGACCGGAGAGTTTATGGGCCGGACTGCCAGCAGCTGGGGTCTGATCCTCCTCTTCTACCTCGTCTTCTATGGGTTTTTGGCGGGAATGTTTTGTCTCACCATGTGGGTGATGTTACAGACTCTGGACGACAATGTCCCGCGCTACCAGGACCGGGTGGCCAATCCAGGTTTGGTGATTCGTCCGCACGCCGCTGAAATCTCCTTCAACCGCAGTGACCCGACAAACTACAACCAGTACGTCCAAAACCTGCACGACCTCCTGCAGCGTTACAACGACAGCATTCAGGAGCGTAACGACTTGTGTATGGTGGGTGAATACACTGAACAGGACAATGAGCCAATCAAGAAGGTTTGTCAGTTTAAACGCAGTATGCTGCGTCAGTGCTCCGGTCTGCACGACTCGAGCTTTGGATTCGCCGAGGGGAAACCGTGCATCATCATCAAGATGAACCGGGTCATCGGACTGAAACCACAAGGAGACCCCTACATCAACTGTACTGCCAAGAGAGCCAGTCCGTTACAGATGCAGTACTACCCGTCAGAAGCTCGTCTGGATAAAATGTTTTTCCCGTATTACGGAAAGAAAGCTCATgCTGACTACGTGCAGCCCCTGGTTGCAGTGCAGTTGTTGCTCTCCAGAGAAGACCTGAACGTGGAGCAGACGGTGGAGTGTAAACTCGAGGGAACCAACCTGCGTAACGACGACGACCGAGACAAGTTTATGGGTCGCGTTGTTTTCCGGGTCAAAGTGGCGGAGTAACCACATCTGCCAGTTGTCATGGATACCACAAACTGTGTTGAAAGTGGAAATAAATGTCCGGTTCAGGACACTCTGTATTTCAGACCTGATCTGATCCTGGATGTCTGGATGTGGTCTTGCTGAGTCTGGTTTCAGCCGTTCGGACGGACGGATCAGGTCAGGTCTGTGTGAAGCATGTGAGCCAGGTGCACACCCGcgtgttgtttttaaatttaaatgtttaatagtgATGTACAAGGATCCCAGCAGTCTGTAATGGAGCAGCACAAACACACTTCACTGTAATGAGATTACTCTTCTTCCATCCTGAAACAAGAGAAAGACAAAATGCCTTCACAGTTTTTATAATTCTGCATTGAGGATGACATTTCtaactttttttaacaataacatTTTCAAGTTCAAAAAGAGAAAACTGATTCTCTGATTGTTCAACATGTAAACGTTTCAGCAGTTTGCAGGATTTGTATTTAAGTAAACATTGACACAATCAGTTCAATGTAGCAGTAGGATGGAAAggcagtaatctgattactgacggccagtataataataataatactatttcaGTTCATGCAGACCACTGCCAGAAAGATTTGAGTAACAAACTTATCAAAGACAGATTCATAACTGCAGAAAGCTACAAATGTTCTACTTGTAGTTTTCCTGTTTAATGTTTGAGTTGTCTCAGTATAACACTAACTGGAGCACAGACAATAATCTTGttgaattattaattatatatacaaTTATAATAAATACTTTTGATAAAACAGGTCCTCTAGAGGATGAACATTGCACTGCGATATAGGACGCTGCCTCGGCGCTCCGCCTGCTGGGACTTTCACCCCTGTcttttaaaatatactttatGAATATATTGAGGTCTCCCAATGTGTTTACAACCTACTGTTGCacagatgtttttaaatgttttgagtgtttttAAAGACTACTGTTGTGTGATTATTAATGAGTTTATCAGCACAGATCCAATCAGCTTCATGTGTGTTAAGATCGTTAAGTTATTTCTATCCTCGTCTGAAACAGATTGATGTATAGTTTCATTATTTATGTTTCTGTCGACTGAAGGAACGACAGGAAACAAGACTATAATGATCTACTCTgctgcaaataaaacacaaagactCTGACATGTCAATCATTTAAAAA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20852 lncRNA downstream 30389 8339161 ~ 8339380 (-) True G15446
TU20845 lncRNA downstream 43986 8324821 ~ 8325783 (-) True G15439
TU20830 lncRNA downstream 109083 8260151 ~ 8260686 (-) True G15430
TU20828 lncRNA downstream 114185 8254873 ~ 8255584 (-) True G15428
TU20785 lncRNA downstream 228367 8137301 ~ 8141402 (-) False LOC120551075
XR_005636443.1 lncRNA upstream 90889 8483166 ~ 8484369 (-) True LOC120544083
TU21360 lncRNA upstream 111655 8503932 ~ 8504154 (-) True G15768
TU21380 lncRNA upstream 159314 8551591 ~ 8600313 (-) True G15783
TU21381 lncRNA upstream 159314 8551591 ~ 8600313 (-) False G15783
TU21400 lncRNA upstream 188344 8580621 ~ 8582560 (-) True G15793
XM_039788227.1 mRNA downstream 214466 8138024 ~ 8155303 (-) False LOC120551075
XM_039777191.1 mRNA downstream 271305 8079224 ~ 8098464 (-) True LOC120543856
XM_039776786.1 mRNA downstream 306428 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA downstream 306431 8027405 ~ 8063338 (-) True LOC120543635
XM_039788203.1 mRNA downstream 383342 7983094 ~ 7986427 (-) True LOC120551059
XM_039776935.1 mRNA upstream 230205 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 290386 8682663 ~ 8684484 (-) True LOC120543940
XM_039778440.1 mRNA upstream 299797 8692074 ~ 8742043 (-) True LOC120544569
XM_039777139.1 mRNA upstream 436136 8828413 ~ 8841376 (-) True LOC120543840
XM_039776983.1 mRNA upstream 457213 8849490 ~ 8880046 (-) False atg16l1
TU20786 other downstream 228994 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 433442 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 859698 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 1029161 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 1161478 7207735 ~ 7208291 (-) False LOC120544114
TU21348 other upstream 76080 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 209795 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 462035 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 468084 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 482064 8874341 ~ 8874620 (-) True LOC120554459

Expression Profile