RNA id: XM_039777416.1


Basic Information

Item Value
RNA id XM_039777416.1
length 858
RNA type mRNA
GC content 0.52
exon number 4
gene id polr2d
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7495033 ~ 7509145 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGACTGTATGTGTTATTGTGACTGGAAGGCGCCGAGCTCGAGCTGCAACGTGTGTCCGTGTTTTAGAGTCTTTGAAGCCGCACAGATTCACCGTCTCTCCGCCGGGACTCTGCGCTCGGTCCCCGGTAACGGCTGCTGCTGTTTGACGGTAACCGTTAACCGTTAGCTGTTAGtcgttagctgttagctaggTGTCATGGCGACTGGAAGCGGCGCGGCTACGGCTAATGTCGGAGATGTTGAAGAAGATGCTTCACAGCTGCTGTTTCCTAAAGagtttgagaacgcgGAGACCCTGCTGAACTCGGAGGTGCACATGCTGCTGGAGCACCGCAAGCAGCAGAACGAGAGCGCCGAGGACGAGCAGGAGCTGTCTGAAGTCTTCATGAAGACGCTCAACTACACGGCTCGGTTCAGTCGCTTCAAGAACCGCGAGACCATCACCGCCGTACGCAGTCTCCTCCTGCAGAAGAAGCTCCATAAGTTTGAGTTGGCCAGTTTAGCAAATCTGTGTCCTGAAGCTGCAGAAGAGGCCAAAGCCCTGATCCCCAGTCTGGAGGGGAGGTTTGAAGACGAGGAGCTTCAGCAGATCCTGGACGACATCCAGACCAAGAGAAGTTTCCAGTACTGAGACCAgatacctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctgtctgtctctctctgtctgtctgcctgtctgtgtgtctgtgtgtctgcctgtctgtctgtctgtctctctgtctgtctgtctgtctgtgatgaTGTCACTCAGGTGGTTAAAAAGTCACAATAAActttaatttgtcttttttttaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03012 RPB4, POLR2D; DNA-directed RNA polymerase II subunit RPB4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20487 lncRNA downstream 3017 7491386 ~ 7492016 (-) True G15235
TU20477 lncRNA downstream 33243 7446158 ~ 7461790 (-) True G15226
TU20478 lncRNA downstream 35494 7446701 ~ 7459539 (-) True G15227
TU20461 lncRNA downstream 75986 7345658 ~ 7419047 (-) True G15211
TU20463 lncRNA downstream 138525 7354804 ~ 7356508 (-) True G15212
TU20627 lncRNA upstream 60837 7569982 ~ 7637023 (-) True G15316
TU20632 lncRNA upstream 60837 7569982 ~ 7592732 (-) False G15316
TU20645 lncRNA upstream 133476 7642621 ~ 7651108 (-) False G15325
TU20644 lncRNA upstream 136073 7645218 ~ 7658962 (-) True G15325
TU20651 lncRNA upstream 158052 7667197 ~ 7745661 (-) True G15330
XM_039777175.1 mRNA downstream 82526 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 83386 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 151140 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 227319 7262974 ~ 7267714 (-) True LOC120544032
XM_039776743.1 mRNA downstream 295494 7142729 ~ 7199539 (-) True LOC120543599
XM_039788182.1 mRNA upstream 203507 7712652 ~ 7715037 (-) True LOC120551046
XM_039788203.1 mRNA upstream 473949 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 513483 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 518260 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 570079 8079224 ~ 8098464 (-) True LOC120543856
TU20455 other downstream 154425 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 286742 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 358929 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 374992 7114719 ~ 7120041 (-) False LOC120543742
TU20324 other downstream 381425 7111699 ~ 7113608 (-) True G15114
unassigned_transcript_84 other upstream 855 7510000 ~ 7510071 (-) True trnag-ucc
unassigned_transcript_85 other upstream 427111 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 628156 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 959212 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 1092927 8602072 ~ 8602890 (-) True G15771

Expression Profile