RNA id: XM_039777467.1


Basic Information

Item Value
RNA id XM_039777467.1
length 1847
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC120543996
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8921436 ~ 8923366 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtcaacactgtgacaaatccttcacaacatctggacatttaaagattcatcagagagttcacaaTGGAGATAATCaacacagctgtgatcaatgtgggacaGCTTTCACACTACAGAGTGCCCTAAAaagacatcaacgcattcatACTGGAGAAAAGCCTTACAGTTGTGATCAATGTGGTACAACATTTTCTAGGAGCGGTCACCTTAAATTTcaccgacgtgttcacactggagaaaagccttacagctgtgatcagtGTGGTACATCATTTTCTAGGAGTGACagccttaaatctcaccagcgcattcacactggagagaagccgtactggtgtgaacaacgTGGTAAAACTTTTTCTCAGAGCAGAAGCCTTAAAGCTcaccgacgtgttcacactggagagaagccgtacaggtgtgaacaatgtggggaaATGTTTTCTCAGAGTGGTACCCTTAAAACACATAatcgcattcacactggagagaagccgtacaggtGTGAACATTGTGGGGAAATGTTTTCTCATAGTGGTAcccttaaatctcaccagcgcattcacactggagagaagccgtactggtgtgaacaatgtggtaaAACTTTTTCTCAGAGCAGAAGCCTTAAATCTCACcaacgtgttcacactggagagaagccttaccggtgtgaacaatgtgggaaaatgtTTTCTCGGAGTAGTAGCCTTGAAgctcaccagcgcattcacactggagagaagctgtacaggtgtgatcaatgtggggcagcttttgCTCAGAGTGGTAACCTTAAAAGACACCAGgtcattcacactggagagaagccgtactggtgtgaacaatgtggtaaAAAATTTTCTCAGAGTGGTAGCCTTAAAAGACaccaccagcgcattcacactgcctcgtagtgaacatgtttcagagccaagctgttccctcctgcctcctcctcatgccctgatagctgagttgttatattctgatcttctctccacattgaaggctgaccagAAGAAACTTTATCTTCTGAACAGCATGTATGTTATCCTGGCTAACACTATACATTACACTCCCTCCCTTTTGAAGGGATTTTCTGAGTTCAGGGTTCAACTGCTAGTGCTTTTTAACTAATGCTGCAACGAAGAAGTATTTGTTGTTCTTAATTCATCACCTTGTAAATAGAATTTACAAAAATCCCCATCGCTGTTTACTAAGGTGATGTCAAATTGctgaaatattcagtttattgtcaCTTAAGACGACAAAAGCTTTAATCAGAACATGGCTGCAAAAAATTATTTGAACAGTTAATGTGTCTAAACTGCGTCTGTGCCGCCGCCATCTTCGGACAGACAACTGATCTTAAAGACTCGGACTCAGAAAAAGATAGTTGTACTGCTTTTGGAATTTCACGGATGAAAACTGTGTTTTACAATATTATACTATTACGAGAGTGTTGAATTTAATATCACAAAAGGTAACATTAATCCTTCTTTTAAGCTAACAGGAAGTTAAGTGACTGTCCTGATACTGAAttgagctaatgctagcttgtgtcaggttatgtatgttttatttaagTGATTATTAATATCTCAGTAAGATGCTGAAAACAATGTTCATTATGTGTGTCACTGAACAGTTCCTCGCGTCATTCCCCATACTCTTTAcccaaattagttgactttactcGCAAATCGTGTGGAAACACTTTAGTTTTTACACAAGCTGAAACTAAACATGTTGAGTTGTATTAACATGGAACCTTACGTttagtatttatatttattagtaCTGTGTGCTCAAAATCATTAGATAAAACTAGCTATTATGACTT

Function

GO:

id name namespace
GO:0000151 ubiquitin ligase complex cellular_component
GO:1990234 transferase complex cellular_component

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21457 lncRNA downstream 619 8918024 ~ 8920817 (-) True G15836
TU21428 lncRNA downstream 9135 8880438 ~ 8912301 (-) False spint2
XR_005636433.1 lncRNA downstream 25054 8894784 ~ 8896382 (-) False LOC120544051
XR_005636432.1 lncRNA downstream 25056 8894784 ~ 8896380 (-) True LOC120544051
XR_005636446.1 lncRNA downstream 34525 8885926 ~ 8886911 (-) True LOC120544086
TU21477 lncRNA upstream 45916 8969282 ~ 8970613 (-) True G15851
TU21437 lncRNA upstream 49897 8973263 ~ 9046433 (-) False G15820
TU21479 lncRNA upstream 57822 8981188 ~ 8983921 (-) True G15853
TU21480 lncRNA upstream 57822 8981188 ~ 8983921 (-) False G15853
TU21481 lncRNA upstream 57822 8981188 ~ 9056979 (-) False G15853
XM_039777012.1 mRNA downstream 6459 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 41390 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA downstream 41390 8849490 ~ 8880046 (-) True atg16l1
XM_039777139.1 mRNA downstream 80060 8828413 ~ 8841376 (-) True LOC120543840
XM_039778440.1 mRNA downstream 179393 8692074 ~ 8742043 (-) True LOC120544569
XM_039776768.1 mRNA upstream 207618 9130984 ~ 9158835 (-) True LOC120543625
XM_039788278.1 mRNA upstream 272621 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 424843 9348209 ~ 9433655 (-) True eif2a
XM_039777530.1 mRNA upstream 564956 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 590110 9513476 ~ 9522231 (-) True LOC120551129
XR_005638456.1 other downstream 46816 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 60796 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 66844 8854312 ~ 8854592 (-) True LOC120554466
TU21363 other downstream 318546 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 451676 8468357 ~ 8469760 (-) True G15757
TU21433 other upstream 48548 8971914 ~ 9046433 (-) True G15820
TU21489 other upstream 208173 9131539 ~ 9144120 (-) False LOC120543625
TU21546 other upstream 314601 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 507495 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 590138 9513504 ~ 9517970 (-) False LOC120551129

Expression Profile