RNA id: XR_005636426.1


Basic Information

Item Value
RNA id XR_005636426.1
length 3422
RNA type transcript
GC content 0.47
exon number 4
gene id LOC120544007
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8796070 ~ 8808975 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttaatgcagtaatgttacatattgtacctttaatatTCTGATATCTTTCAACaagagttaaatataaataacttgTTCCCTTCCTGTTGTGtctccagactgagtggctgtaatctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgattaacaacaacctgcaggattcaggagggaagctgatctcTGTTGGACTGACGAGTCCgcactgcacactggagactctcagtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccgtcccatctgagagagctggacctgagctacaataaTCTAGGAGACTTTGGAGTGAAGCTACTGTCAGCAGGACTGAAGGATCCTCTCTGGAGACTGAACACTCTCAGGTTATCAACCTACTAACTAACTAAtcaactaactgactaactggaattaaataaaagaagtcAGAAGAAAATCGAGTTGTCCCTTGCGTCCTTTAGTCCTTAAAGAGGCCTTTTTCAAGTTTGGGCAAAGAGCTGAAGTGTGAACCATACACAACTTGACAGTTGATAACCGCACCGTGGCAGTGAAGACAAAAGGATTAACGGCCTGAAGTCAGGAAAGCTGTCGTCGCAGAGAGGAGGATTGACTGACATCTCAACATGGCGGAGGAAGCTCTTGGGAAAACAGTGAAGGAGCTGAAGCAAAAAAGAACTTTAGCTAAAAGGCGTTTTACCAAGCAGCAAACTTCCTCAGCAGAGGCGCAAAACACATGACTAAAAGAGAACTACAAGAGGAGTTCAAGAAGCTCACGTCAGAGGCGAGGAAGGTCAGTGAGACAAATAACGAATACAGGGCTGGCCTTCTGGCAGTCATTGAAGCTGAAACCGATGAGGGTGAAGAAGCAGAACTGAGCAAGCAGCATCAGACTGAACTTGAGAAGACGTTCCAAGAATGCAAAGCACGATTGGATGAGGTCAGGGAGAAGATCCAGTCCAATCTATGGCCTAGATATGGCAAAAACGAGGTCAAGTCTGCAATCCATGAAGCTGAGACAGCCTGTGATGGAGTTGCTCAAATACCTGAATGTTACAGCTGTAAACAGAGATGGCTACGAGCTACGGTGGGATAGTGCGAAAACACAAGTCCAAAATGCATTCACAAGCCTAGCAGAGTGGGAGATGTGAATTCCAGTGGCAGAAAAGGAATTGAAAAATTCTGCAAGCGTTGTGATCTCCAGCTCTCTTTCCTCACTCAGAGTCATTTCGTTGCCTCCTGGTTGACAATTGCCGCACCGGCATCCTCCACACTTCGGTTCGCAAGCTGCTCCAATGCTGTCCCATTCCCACCAATCCAAGAACTATCTGCGAGCAACTGTGCTTTTGGTTTCAGCTGTGCACTCTTGTGTTTTAGTTATCTCTTGATACTTTACAGCGGTTGCTCTCATGGATCGAGGAAATTATGTTTCAGACCTGAATAAACAGATCTGGATGTGCTCCACCAACAGTCTTTCCTAGCGGGCTCTCCCATAAGACAAGGTCTCCAATCACCTTCACTCTTTGCGGCGCAAGTCTTCCTTCGCGGTGGCTTATCAGTAGTTAAATTCTCTCCGGTCTCCTCAGATCTCCTAGATTGATTTCTGGGAAGAACTTCTTGAGTTGCTCAGGTTTGATGACTCTGTGGATGTTGGGAATTTCATTCAAACCATAGCAGACAAGCTCTGTGCCTCTTGGCATTTTGATCCTCACTCTGAGGAGATAACCTTCACGGCCATTCCTCCAACTCCTTGGACGACTAAAGTGATGTTTTCACTTCGGAGATTTAATCTCCTGGCAGCTCTGTTGTGATATAATTTGTGTCTGATGCCAAGTCGATCAGGGTTCCAATTGTTTGTCCTGCATTGGCAGTTACCTCGAGCGGCATTAGAATAACTGGCAATTCTTCTACTACACTTGACGCAATCTCTCCAAGCTGGATCTTTTCAACACAGTTCGTCTTTGCGGTGATGTTGGTGAACACTCTCTTGAATTTTTCCACCATCTCTGGGGAGAGCTTAGAAAGGACCAGTATGGTATGTCAGCCACTTGGTGGCACCAAACCCACACTCTGTCACAACACCTGTGCGACTGGTATGGAACAGCAGCTGGAAGTTTAAAGGGGTCAGCATGAATGACCTGCTGCTAAAAGGGCTTGATGTACTCAATCCCATCTGAGCAGTACtactcaggttcagaagaggtGTCCATGCTGCTCTTGGAGACATCAAAAAGATGTACAATTTGGTGTGGTTAGAAGACCTGGAAATGCACCTCCACAGATTTCTCTGGAGAAACACTGAGGAGGAAGAGATTGAAGAGTATGCCATCACCAGAGTCAACATTGGCGATCGACCAGCAGGGTGCATTGCACAACTGGCCATGAGAGAGACAGCAAAACTGCCCATGTTTGCTCACCTGGAGGAGGAACGTAGGATCCTTGAAGAGGATGCCTATGTCGATGACATCCTGACTTCCCATAATGACTTACAAAAGCTGGACAAGAACACTAAAAGAATTTAAGAGATCCTGAGGACAGGCGGATTCTTCCTCAAACCCTGGGTCCGGTCAGGCCAAAGTGGGAGGCAGGAGATCGTACCAGGAGAACAAGGAGCAGAGTCAAGCACAGTACTCTTTCTCCCAAACCAGATGAGGAAAGGAGACAATAAAGCCCTCGGAGTTGGATACCTTGTTGAAGAGGATAAACTGTACCCTATGACTTCAATCAATTTCtcaaagaggaaaaagaagatgaCCGTCGGAAAAAATCTCCTTGATGAAGAGGTGAGAGGGAAAACTCCAAACCCACTGATGAGAAGAGAACTGCTAAGCCAAGTAGCTAGCCTGTATGACCCAATAGGCCTCGTCACACCTGCCACAACAAAAGGGCGCCGTTCTTGTCAGAAAGGCGTTTCAAGAAGCTGGAGGCAAAACTGTGACCTGAGACACGTGGGACAAACCTCTGTCTGAATAATTGAGAGAAGAAGCCATCTAACTGTTTGAGGAATACACACGTCTTGGCCAAATCACCTTCCACAGAAGCCTCACACTAGTCAACTGGATTGGAAAACCATGGGGAATAACATTCTCTGATGGAAGTGATAAGAGCTATGGAGCCGTAGTGTACTTCAGATGGGGAACTGAGCAAGGCATCCAAGTATCAATGGTGAAATGTTTGGTGAAAAAGCATTTCACTGGAATTCCTTCATGGAAGAGGAGACTCTCATTCAGACACATTCAGCTCATTTGGGATTCTGGAGATGCAACCGcccgAATATGAAATGAGTAAATGCCAACCCTACCCCCTCCAACCCTgtgagtgatgtaatgcccctcccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20926 lncRNA upstream 18122 8776638 ~ 8777948 (+) True G15485
TU20977 lncRNA upstream 41648 8751741 ~ 8754422 (+) True G15519
TU20952 lncRNA upstream 95186 8690012 ~ 8700884 (+) True G15507
TU20951 lncRNA upstream 103526 8690012 ~ 8692544 (+) False G15507
TU20894 lncRNA upstream 174416 8620854 ~ 8621654 (+) False LOC120543817
TU20982 lncRNA downstream 25150 8833920 ~ 8834390 (+) True G15524
TU20983 lncRNA downstream 25150 8833920 ~ 8834390 (+) False G15524
TU20965 lncRNA downstream 65172 8873942 ~ 8882044 (+) False G15513
TU20993 lncRNA downstream 67450 8876220 ~ 8877550 (+) True G15530
TU20961 lncRNA downstream 71706 8880476 ~ 8891836 (+) False G15513
XM_039777085.1 mRNA upstream 174962 8581479 ~ 8621108 (+) True LOC120543817
XM_039777099.1 mRNA upstream 229483 8547618 ~ 8566587 (+) True rnf168
XM_039776897.1 mRNA upstream 326310 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 373734 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 488860 8244631 ~ 8307210 (+) True LOC120551081
XM_039776753.1 mRNA downstream 227766 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 450307 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 474694 9283464 ~ 9301261 (+) True LOC120551113
XM_039777059.1 mRNA downstream 500429 9309199 ~ 9315322 (+) True LOC120543803
XM_039777036.1 mRNA downstream 500437 9309207 ~ 9329512 (+) False LOC120543792
TU20798 other upstream 623579 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 624295 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 952413 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 952413 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 952413 7836049 ~ 7843657 (+) False rffl
TU20986 other downstream 40731 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 117822 8926592 ~ 8930270 (+) True G15540
TU21033 other downstream 185411 8994181 ~ 9041303 (+) False G15552
TU21035 other downstream 231789 9040559 ~ 9082408 (+) True G15552
TU21037 other downstream 231789 9040559 ~ 9082408 (+) False G15552

Expression Profile