RNA id: XM_039777788.1


Basic Information

Item Value
RNA id XM_039777788.1
length 7144
RNA type mRNA
GC content 0.48
exon number 24
gene id sgsm2
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15538653 ~ 15624260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGTTGAGGAAGGCGGACCCACTGACGTCGCCGTGAAGCTGCTCGGCTGCGTCAGAGTCCAGCTGAGCGAAGGGAGAAGGAAACGAGGAATAAAAAGGAAAGCTGTGTCTGAAGGGCTGGGGAGAGCGGACGGACAGTGTCAGGGAGACAGACCTGTGTCGTGCACACCGCGgacggacagacggacagagatGGAGGGCTCCACGGAGGAAGACTACAAAGAGAAATTGTTATGGAACGTTAAACGCGAGGTGAAGCAGATTATGGAGGAAGCAGTGACTAAGAAATTTGTCCACGAAGACAGCAGCCACATCATTGCTCTGTGCACTGCTATCGAGGCCTGCCTGAGTCACCTGCTGAAGAGACGGGCAGCTGGTTTTCTCCGCAGCGACAAGATCGCCGCCCTCTTCACCAAAGTCGGCAAAGTCTACGATACTGCTGGCGAGGTTTGCCGTAAGGTGCAAGAGCAACTCCAGCAGCAGGCTGATCTCACCAGGAGAAGCCAGAGTGTGGGCCATGAACCTCTGAGAAGACAGGGCTCCTCCACAACCAGCCGCCCCCCTCAGCCCCTCTCGGCACAGGCCATCAAACACATCTGGGTCCGAACGGCTCTCTTCGAGAAAGTTCTGGACAAGATAGTTCAGTACATTGTGGACAACTCCAGTAAATACTATGAGAGGGAAGCTCTGATGCATGACTTAGTCTTCGGGCCCATCTTGGCAGTCTTACTGGTTGGGCCCTGTGCTCTGGAATACACCAAACTGAAGACGTCAGATCATTTCTGGACTGACCCTTCAGCCAACGAGCTAGTTCAGCGCCACCGTATCCACGGGGCCCACCGGGGCCAGGACACATCGGCCGGCCGCCGGCCTGCTCTGGGGATCCGCAAGAGGCAGTCCAGTGGCAGCATGTCAGATGACAGGTTTGCTGCATCAGCAAGGGAGTATGTGGAGTCTCTTCACCAAAACTCCAGAACACACCTTCTCTACGGCAAAAACAACGTCCTGGTGCAACCGAAGAAGGACATGGAGGTGTTGCGGGGCTACTTCTCACTCCACCAGGCTGGCGATAACCTCACCCTCAAGTGGACACCCAACAAGCTCATCAACGGCACGCTGGGAGACTGTGACCTGGAGAAGAGTATCTACTGGGACTATGCGCTGACTGTCCCGCTGCGCCAGATAGTCTGTATCCACTGTCACCAACGCCCTGATTGTGGTGGTACACTGGTTCTGGTTAGTCAGGATGGAATCCAGCGGCCGCCTCTCCACTTCCCCCCTGGTGGTCACCTCCTGGCCTTCCTCGCCTGTCTGGAAACAGGCCTTTTACCACGGGGTCAGCTGGAGCCCCCCCTCTGGTCCCAGAAAGGCAAGGGAAAAGTGTTCCCTAAACTGAAGAAGAGGAGCAGTACTGCCAGGCTCATCGACCAGGACAGGAACGGTGAGGAGCCTACAGCTGCTGACTACGTGTTTCGCATCGTCTACCCTGGATACCGCTACGACGCCATCACTATAAACTACCACCACACCACGGGCAGCCGCGCTCCGTCGCTGGACGACgacgaggaagaggaagatAGGCTCCATGCTATGATCTCAATGATCTGCTCGCGGAACCTCACAGACCCTAATGTCATGAAAGACCACGGGGAGATGATGGAGATGCAGGGTTTCGGAGGCAGCCCGTCGTCGTGGCAACAGGCCGGAGTGCCCACTCTGGAATCGCAGTGCCAGTCTTGCTCCACGGCTGGCAGCAACGTGTCGTTCGACTACCCGGCCGGCTGTACCTGCATACACGACCCACTAGACATTCACACTATTCCTCTTAAGATGCTCTGCCAGAACATGAAGAGGCAGATAGTCTCCAGAGCCTTTTATGGATGGCTGGCCTACTGCCGACACCTGTCCACTGTGCGGACTCACCTGTCAGCTCTGGTCAACCACAGCATCGTCCCTCCAGACAGACCCTGCGAGGCGTCCGGGGGCCTCAGCAAGGAGGTGTGGAGCAAGTACCAGAAAGACTGCAAGaactaTAAGGAGCTGGAGCTGCTAAGGCTGGTTTATTATGGCGGAGTGCAGCATGACATAAGGAAGGAGGTCTGGCCTTTCCTGCTGGGGCACTACAAGTTTGGCATGGGCAAAAAGGACATGAGCCAGaTTGATGGAAAGATCAGCGAGCGCTACCAGCAGGTGATGCGCGAGTGGAAGGCCTGTGAGGTGATTGTCAAGCAGAGGGAAAAGGAGATGCAGTCGGCCATCTTTGCCAAGCTCTCCTCAGGCAGCAGCATCGACAGTCACGTCCTGCGACTCGTTCACAGAGACTCCACACTAAGCAATGAGGTGTTTATGTCGGTGGATGAGCCGGATGCAGGGAGCCAGGAGACGCCCAGTGGAGAGGACAGTACCCCCACCATGACCACCCTGGTTCCCCCTGCAGCCCTCCCCCCAGAGGAGCGACCTCTGGTGGAGTTTGACTCCCCTGACTCGGGTCTCCCTTCCTCCAGAAACTACTCAGTGACCTCTGCTCATTCCCAGATCCTGTCCAGCATAGATGACGGTCAGAGCAcggaggaggaaggggggggCGGGGAGGAGGGCAGGACTTCGGGTGTGCTGGGGCGGCGTCAGGACTCTCTGACTGAGGACAGGCTGTGCAGTCAGCTGGACAAACTGGTGACCAATGGAGCAGCTGCAGAGGCGATATCACCGTCACTCTCCTCATATACGATCGAGCTGTTGGACACAGTCGCCCTCAACCTCCACAGGATAGACAAAGATgtgcagcgctgcgaccgcaaCTATTATTACTTCACCACAGCCAATCTGGAGAAACTACGCAACATCATGTGCAGCTATGTGTGGGAGCATTTGGAGATAGGCTACGTTCAGGGCATGTGTGACCTGCTCGCGCCGCTCATGGTCATCCTGGATGATGagtgCCTGGCGTACAGCTGTTTCACTCAGCTAATGAAGAGGATGAGTCAGAACTTCCCTAATGGCGGAGCCATGGACACACACTTCGCCAACATGAGGTCATTGATCCAGATCCTGGACTCTGAGCTGTTTGAACTGATGCAGCAGAATGGAGATTACACTCACTTCTACTTCTGTTACCGCTGGTTCCTGCTGGACTTCAAGAGAGaGCTCCTGTACGAGGACGTGTTTGCAGTGTGGGAGGTGATCTGGGTGGCTCCCAGGATTTCCTCGCAGCACTTTGTCCTCTTTCTGGCCTTGGCCCTGGTCACAGTCTACCGTGAGATCATCGTGGACAACAACATGGACTTCACTGACATCATTAAGTTCTTCAACGAGATGGCTGAGCGTCATGATGTCCAACACATCTTGAAGATAGCGCGTGAGCTGGTGCACAAAGTCCAGTCTCTGATGGACAACAAGTGACTatagaggaagagaaggaggaggaatggGAGGATGCAGAGGGAGAGTGTCCGACTAGAGGACACTCAGCTCTTCCTCTCATCCCTCAGAGAGTGTTTCCAGGCCTTCCCCTATCCAGAGCAGGTCCAGTGAGTCCAGGTCTCCTCCCTGCCCAGATGAAGGCCCTGGGAGTGTGCCAGGAGCGCTGCTGGAGCGGCCTGGCTCTGGAGCGGCCTGGCTCTGGGGCGGCCTGGCTCCGGAGCTCGGCTTCGATCTGTTTACATTTACCTTCACATGGAATGCCCATGGTGTCCGTACAGACATGTGGATTTGTCTGCATGCTTGTGAGTTTGATCACACTGTGAACACATTCTTGAGTCTCCCCAGTCCTATAGAGGATGTGTGCgtgcattaaaacacacacacacacacacacacacacacacacacacacactctgaaaacaACATCGGTTCTACCAATACTTCAGTTTTCTAACGTGTCACTCCTTTCCTAACTCTGAACTGAACATTTTGGATGCTTGTCTGGAAGGCTTTAGCGTTCTCAGTGTTTGATAGATTCTTCCATGCAATGCCAGTGGAGGCCACAAGGAGTGCAGGATTTACAAACAACGTTGTCAGAGGAGCCAGAAAGTTTTCATTAGTGACCAAATGGACTGTGCCAACTACCTTTTCATGAGTGTTTTCTACAacaagcatgtgtgtttttacCCCCCTTTTTTCTTTATGTCCAGGAGTTCATTACCACACAAATGTTGCCTTTATCAGTAACAGCCCAAGGTACTTAGTTGCACTTTTTTGGGAGGATTTCCTTCATGGTGCCTGTGAAAGCCTCACCAGAGTTGGTGGGGGCCAGAGGCGCCACGAGAGGCCAAACTGTCGAGAAACTCTGGATGAATTGCAGCCAGTTTTCCTGAGCATGTTAGTCCGTGGTTAATGCATGTTTAATCCTCGTTCCAAGACAGAAGACACATAGCATCAGAGCACAACAGTAAAGACAAAAGCACACAGGCCTTACtccttattttaaaataaaacatgtgcATCTCTATTTAGTAGTACCATGGATTTTGTTCAGGGACCACTGGGGATGCTGAGGTCATGGCTTtggtaatattttatttttaaagattattctttgggctttttaggcctttatttataggacagctgaagagagggagagagagagagagagagggaatgacatgcagcaaagggccgcaggtcagagttgaacttGCTGCCGCTTCGTCGAGgggtaaacctctgtatatgggtgcACACTTTGGTAATATTTCtggggatttggggtgttaaaTGACCGGAGGataaattaacataaaaaacacatattACAACATGTCAGGTCaaggctgattttttttttaatttaaattaagatCTTAAAAGTAACTGTTTTAAAGGGCTTTAGTATTATCCAACAGCTTTTAGACCATTATGTTAGGAAATGCAAATTTACAACtttcaaatgtaattttaaagaaatgtgtaaagagatTTGTGGCTGGTAAGAAGTAGACACAACAGGCTCAGAGAAAGAATAtataagaaagtgaaaaaatgAAACATGATTAAGAAACACCTTTGAGAATGGAAAGAAAGTAACAGGTATTGAGTATATTTACCTGTATCTAAATGTGGATATTCCTTAAGAAGAAGAATACGACTGGCATTAttctagattttttttgttattgtcaacaaatccaatGAAAAGATCAAACCTTTCCAATTCTCTGTGGCCTCAGCCTCATgcccattggttcctactaAAGAAAAACTGAGtatcaaaaactttttttaaaggctaAGTAATTTACTAAAACAACTGGCCCCTTTAGTTTTAAAGCAAGCTTTATACGAACAAGAGTAAATAGTgaatttgttggggactattttcagtggTGGATTAATATGCATTTGATGCTGTTCTTAGTATTAAAGCAGCAGATTTCCCCCTGATTTTATAATTATTCTTTTGTGGGAATATGTCACCCTTCTCCCTGGATTTCTTGAAACAGACATAATTTTCTGATATTCTTTCATATTTGTTAGATAATGTGGTAACACTAGAGTAATTTCTCTTAAAAGTACCTTAATTAGTATCTTAAAATTAGTATCTTACAGAATGGTTTGATTCTCTgtcttttaataataataataaattgaatttatgtagcgcttttcacaaactcaaagtcgctttacaggtagataataaagacaaacaaaacaaaaaaaagattcaggcacagatgaaaaggAAAGGGGGGCGTGGGGCTAGGGAcaggcagaggtgaagagatgggtcttgaggcgggactgaaGATGGGGAGGGACTCAGAGgagcggatctcttgggggagggagttccagagcgtGGGAGCTGCCCTGCTGAGCTGAGGTTATTACTGCTTCAGTGGCACGGAACAAGATAtaaggctacacacacacacacttgttagTAGGATACATTTATTGTTGGTttgggtcttttcatgggatttattgcaatagaaaaaaatataactATTACCAGCCTTGTGCTTTACATTAGTCCATGTCTTTCTTCAGAACGTGAGACAAACATGCTCACCGCTCTAAAGCACCACGAAGACTTTTTATTGCATTCAGCACTATACTGTCAGGAAATGTGGTTGCAATTGTCCATGTGGAACCTCGTTCTCCTCCTGCCTAAAGTCCGGcgtctaaaaaataaaacatgcttgGACTGGGTTGGTCTAAATAACAAATCTGTGGTCTGAGAAGAAGCGGATTCCAACGCCAAACTTTCTCTAGTGTTCAGTGAATCAGTATTAGGTTGGTGCTGGCTTCGCAGTAACAGCACAGAGTACATTCATGTTTGTATCTGAGAGGATTTGGGACATTTTTGATACCGTTTCCAATCCCCGTCGTCAGTGTGACCCTTTATCTCCACCCTCCTCGTCTCCTCAAAACGTCCAACCGAGCTGCATATGATTGGTCATCCAGCACGGACCTGCACCTGTGATTCAAGTGCCAAGAGTCTTCCCCAATCCTGAAGTGTACTGTAGTCATCCAGCTCTCTGATTTACTAGTTTGATCCCAGGAACGGGCGGTGGTGGAGATGTACCTCGATGTACATCCTCGCCACTCAACCACCCTGCCGCCATGGCGACGGACGAGGGTCGCCGGGGGAACAGGGGCCCGTAGCAGAGCTTTTTCTTCCAATCAGGACATTGTGTACCAAAGCCTTGAAACAGCCCCCTCTGTGGTATGACGACAACGTGCAATTTCATACTGCATGTTAAAGACTGACTGTTTACTAtgtgtgtaaaatatttttgaaaatggtGATCTTGGATTATTTAACTACTGTGCAATTTCTGTCGTTTGAGAAAATCCTTCAAAGTCTATATTGCTGTTAATACGAACCGAAAGCCCAATATTTCTATGAAGACAGTaagaacatatatatatataaaacttatTTTGAGATCTATTTTTATGTTGGTTTTAGCAGCACTAGTTGGAGGTGTATACTGTGCAGAAATGCAGAATGTTTGCAGACTATGTTACACGTTGACTGTTAAGTGTTTTTTCCTCAATGTTGTGCACTGACTTCAAGATTTcaaatttctatttatttaaagAGCCAATGATTGCATTGCTGAATATGTATTGGTAAGGATGTATCATTTGCCTTGAATGTAATGTATTATTAAATAAGAGGTTGTTCTGTA

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23545 lncRNA downstream 3426 15533876 ~ 15535227 (-) True G17253
TU23515 lncRNA downstream 97143 15434214 ~ 15441510 (-) True G17225
TU23512 lncRNA downstream 142314 15396102 ~ 15396339 (-) True G17222
TU23511 lncRNA downstream 145233 15393206 ~ 15393420 (-) True G17221
TU23456 lncRNA downstream 212884 15318876 ~ 15325769 (-) False si:ch1073-145m9.1
TU23557 lncRNA upstream 17743 15642003 ~ 15642990 (-) True G17264
TU23562 lncRNA upstream 22480 15646740 ~ 15651000 (-) False lyrm9
TU23563 lncRNA upstream 22480 15646740 ~ 15651000 (-) False lyrm9
TU23597 lncRNA upstream 86524 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA upstream 88872 15713132 ~ 15714089 (-) True LOC120549843
XM_039821276.1 mRNA downstream 212854 15318840 ~ 15325799 (-) False si:ch1073-145m9.1
XM_039790856.1 mRNA downstream 246438 15282746 ~ 15292215 (-) False ppm1da
XM_039790847.1 mRNA downstream 246438 15282746 ~ 15292215 (-) True ppm1da
XM_039821859.1 mRNA downstream 256738 15187451 ~ 15281915 (-) True brip1
XM_039783680.1 mRNA downstream 761276 14775034 ~ 14777377 (-) True opa3
XM_039777815.1 mRNA upstream 1830 15626090 ~ 15637956 (-) True tnfaip1
XM_039818446.1 mRNA upstream 22381 15646641 ~ 15651047 (-) False lyrm9
XM_039818454.1 mRNA upstream 22381 15646641 ~ 15651047 (-) True lyrm9
XM_039818972.1 mRNA upstream 27213 15651473 ~ 15682792 (-) True LOC120570576
XM_039786991.1 mRNA upstream 71544 15695804 ~ 15698453 (-) True LOC120549823
XR_005641363.1 other downstream 212855 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1451889 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 1715596 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 1784037 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23599 other upstream 71294 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 71294 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 78349 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 421748 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other upstream 425612 16049872 ~ 16060408 (-) False sdhdb

Expression Profile