Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006741 |
| length | 826 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 8 |
| gene id | XLOC_003446 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 24339362 ~ 24356093 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2852 | Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39). |
| ensembl_id | ENSDART00000134009 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008610 | lncRNA | upstream | 88415 | 24120291 ~ 24251616 (+) | False | XLOC_003442 |
| TCONS_00008400 | lncRNA | upstream | 162380 | 24176418 ~ 24177651 (+) | True | XLOC_003443 |
| TCONS_00006722 | lncRNA | upstream | 188814 | 24116083 ~ 24151217 (+) | True | XLOC_003441 |
| TCONS_00008608 | lncRNA | upstream | 256443 | 24063943 ~ 24083588 (+) | False | XLOC_003440 |
| TCONS_00006744 | lncRNA | downstream | 135 | 24343328 ~ 24344304 (+) | False | XLOC_003446 |
| TCONS_00006773 | lncRNA | downstream | 557286 | 24900479 ~ 24905875 (+) | False | XLOC_003459 |
| TCONS_00008401 | lncRNA | downstream | 716269 | 25059462 ~ 25060098 (+) | True | XLOC_003463 |
| TCONS_00008612 | lncRNA | downstream | 838664 | 25181857 ~ 25189277 (+) | False | XLOC_003466 |
| TCONS_00008613 | lncRNA | downstream | 838899 | 25182092 ~ 25228195 (+) | False | XLOC_003466 |
| TCONS_00006730 | mRNA | upstream | 7979 | 24316110 ~ 24332052 (+) | True | XLOC_003445 |
| TCONS_00006727 | mRNA | upstream | 8713 | 24313931 ~ 24331318 (+) | False | XLOC_003445 |
| TCONS_00006728 | mRNA | upstream | 9839 | 24313994 ~ 24330192 (+) | False | XLOC_003445 |
| TCONS_00006729 | mRNA | upstream | 11380 | 24314148 ~ 24328651 (+) | False | XLOC_003445 |
| TCONS_00006726 | mRNA | upstream | 29386 | 24298432 ~ 24310645 (+) | True | XLOC_003442 |
| TCONS_00006745 | mRNA | downstream | 5232 | 24348425 ~ 24356093 (+) | True | XLOC_003446 |
| TCONS_00006747 | mRNA | downstream | 277549 | 24620742 ~ 24658494 (+) | False | XLOC_003448 |
| TCONS_00006748 | mRNA | downstream | 277625 | 24620818 ~ 24664031 (+) | False | XLOC_003448 |
| TCONS_00006749 | mRNA | downstream | 296550 | 24639743 ~ 24662785 (+) | False | XLOC_003448 |
| TCONS_00006750 | mRNA | downstream | 296550 | 24639743 ~ 24663227 (+) | True | XLOC_003448 |
| TCONS_00006723 | other | upstream | 161093 | 24178823 ~ 24178938 (+) | True | XLOC_003444 |
| TCONS_00006700 | other | upstream | 942646 | 23397270 ~ 23397385 (+) | True | XLOC_003428 |
| TCONS_00006698 | other | upstream | 1625900 | 22714015 ~ 22714131 (+) | True | XLOC_003425 |
| TCONS_00006686 | other | upstream | 2689393 | 21650522 ~ 21650638 (+) | True | XLOC_003418 |
| TCONS_00006677 | other | upstream | 3287687 | 21052228 ~ 21052344 (+) | True | XLOC_003409 |
| TCONS_00006746 | other | downstream | 237386 | 24580579 ~ 24581114 (+) | True | XLOC_003447 |
| TCONS_00006769 | other | downstream | 538116 | 24881309 ~ 24883345 (+) | True | XLOC_003457 |
| TCONS_00006774 | other | downstream | 558685 | 24901878 ~ 24903210 (+) | True | XLOC_003459 |
| TCONS_00006779 | other | downstream | 637726 | 24980919 ~ 24983498 (+) | True | XLOC_003460 |
| TCONS_00006781 | other | downstream | 651540 | 24994733 ~ 25025497 (+) | False | XLOC_003461 |
