RNA id: XM_039777990.1


Basic Information

Item Value
RNA id XM_039777990.1
length 3653
RNA type mRNA
GC content 0.53
exon number 18
gene id sez6b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44987963 ~ 45315867 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGTCGTGCTGAAAGCCTGAAGAACAGCCTCCCAGCACAGAGCAGAGCCAGAGCAGCGTCAGCGGCTCTACAGTCCGCAGGCTTCAGCCACTGGAGTCCCACATCTCCGTAGTCTGTAGACTGTAGTCGTGTTGGCGGACCGACACTAAGAGTCCATCGTCTCTGTCAATGAGTCCATTCAGACAGCGGACCCGGGCTGGAGTCACCGAGAGCAGCGCTCGGTGTGTGTAGTCGGTGTTCGGCGGAGCTCTCCGTGTCTCAGTCCGCCAAGAGGAAAAGTGTTGATCCCAAGGACGTTCGCTACCCAAATCTTGAGAAGCGTAAAACAGAGGGGGGGTGGGTAGGGGGGAAACATGATGAATGCGATCAGAGATTATTTCCCTCTCCTGCTTGTTTTTGGGGCGGCGGTGACGGACATGGGCGCTAAAGCGTCTGCGTCTGAGGACGTTTTATCTCTGACCCCGGGGGGCCCTGCGGAGAGCGGGGCGGGCCTGTACCCCACCACCCAAGACACGGGCAGGAGGCCCCCCATTGTCACCACTGCCCCGCCTGTCAATTTTCCCAACCACCACCCACTCTACAGAAATCCCCCCCAGCGCCCTCACGGTCAGCCAAACTACTTTGAAGACAGTGGGTTATCCAGCTCTCAGCCCAGCTTCCCCCCCCTGTCGTATCCCCTGGATCACGGTGAGAAAAGAGCTTCAGATGAGAGTGCTGGAAGCTCCAACATGCAGACAACCCTTGTAAAGTGTGCATCTGCAGCCACTTCTCACTCCAACACCCCTTCTCCAGTGACCAGTATGGGTTTAAAAGATCCAGAAGATGCTGCCGGCGTCCcctcttctgctgctgctgctgccagggAAGGAGATGTAGAGAGGCCTGGTCAGCCTGGGCTGGAGCACAACGGAGAGgagaccaccaccaccaccatcaccaccaccaccaccaccacgcaCAGTCCAGTTCCCTGCCAGCTGAACCTAACTGGGCCAGAAGGATACATAGAGGCTCCACCACAGTCCAGCTCTGCTCTTCACTCCACCATGGACTGCAGCTACACCATCACTGTCTATATGGGCTATGGAGTAGAGGTCCAGGTGATGAATGTGAATCTATCTGAGGGAGACAAGGTGGTGTTTGAAGATGTGGGCCACATGGAGAACACCATGCTGGCCAATGAGTCCATCCTGATGAGGGGATTGGTTGTACGCAGCCACAGCAATCAGATCTCCATCCGCTTCCACAGCCGGAGATCTCAGGGTGGATCAGTCCTGCTCAGATACCAAGCCTTTGTGTTGAGCTGTGTCTTCCCCCGGCGGCCTCTCTACGGCGATGTATCAGTGAGCAGTCTCCACTCCGGAGGCGAGGCTTTCTTCTCCTGTCTGAGCGGCTACATGCTGCAGGGCTCCAGTCTGCTGACCTGCCGCAATGCTAGCACCCCCTACTGGAGTGGCAAGGAACCACACTGCCTAGctGCGTGTGGTGGTTTGATCAGGAACGTCACAGTCGGTCGGATCGTCTCTCCTGGGTTTCCCAGCAACTACAGCAACAACCTGACCTGCCACTGGCTGCTGGAGGCCCCTGAGGGCCACAGACTACATATCCACTTTGAGAAGGTGGCACTGGCTGAGGATGATGATCGGCTGCTGATCAAAAATGGTAACAGCATAGATGCAGCTGCCCTGTATGATTCATATGAGGTGGAGTATCTTCCCAATGAAGGTCTACTCAGCACGTCCAGGCACCTCTTCATTGAGCTGACTTCAGATGCTACTGGCACATCCACTGGAATTGCCATCAGGTACCAAGGCTTTGCAGCAGGCCACTGTTACGAACCCTTTGTGAAGTACGGTAACCTGACCAGTAGCGACAACACTTGGGCAGTGGGAGCTGTGGTGGAGTTTGCCTGTGACCCCGGTTATACTCTGGAACAGGGATCTGTCACCATTGAATGCATGGACCCCAACTATCCCCAGTGGAACGAGACCGAGCCTGCCTGCAGAGctGTGTGTAGTGGCGAGATCACAGACTCCGCTGGAGTGGTGCTGTCTCCTAACTGGCCTGAAGCCTATGATAAAGGCCAGGACTGTATATGGGGAATCCATGTTGAGGAGGACAAGAGGATCATGGTGGACATTCAAGTGTTGAACATTGGGAAGAATGACATGTTGACCTTTTATGATGGAGATGACCTCACAGCTAAAGTACTGGGTCAGTATGGAGGATCAAAGTCCCGATTTAAGCTCTACACCTCCACCGCAGACGTCACCATCCAGTTCCAGTCAGACCCTGCCACCAATGTCTACGGCTACGGCAACGGCTTCATAGTCCACTTCTTCGaagTAGCTCGTAATGACAGCTGCCCTGAGCTTCCAGAGATCTCTAATGGCTGGAAGAGTACATCTCACCCTGAGCTCGTTCAAGGCACTGTGGTGACCTACCAGTGTTACCCTGGTTATCAGGTGGTGGGCGCAGAGCTGCTCATGTGCCAGTGGGACCTGACCTGGAGCGGCGACCTACCAAGCTGTGAGAGAGTGGTGTCTTGCCCTGACCCTGGAAAGGTGGATCACAGCAGACGGGTGCTGTCAGGTCCCCATTTCACCGTGGCTTCAACCATCCAGTACATCTGCAACAAGGGCTTCATTCTGTCTGGAAACAGCCTGCTCACCTGCTTCAATCGAGGGTCCTCAGGCCCCAAGTGGAACCAGAAGCTGCCTAAATGCCTGCCGGAGACTTTTGAGCCCTGCAGTCACCCAGGAACACCTACCTATGGGATCCCCAGCTCCAACAAGCTCCACTTCCAGGCTGGAGAGAACCTCTACTACTCCTGTCTGATTGGCCATCAGCTGCTGGGTGAGCCTGTTCTCCACTGTGTCCCTGGACACCCATCCCACTGGAGTGGGCTGCCACCTGTCTGCAAAGCCCACCCAGCGGCGTCAGATCAGCACAGATTAGATGtGTCTACTGCATACCTAAGAATGGAGGTGGCCCAAGTAGCATTTGCTGTCTTCATccccatcatcctcctcctTGTCCTCGTTATGGGGATCTACCTCTACTTCTCAAAGGTTCAGAGGAAGCCACCACATCTGTCCCTGTCGTCCAACCTACCATATGAAAACATCACTGGAGAATGTACGTTTGACAACTCTTATGAGACAACGAACAATGAGGAAACAAGAGAATACGAGGTTTCGATCTGAAGACGCCAGTGTATGTTTCAGTATGGACAGATAAGAAGCCTGCTGGCCTTTCCAACATCTGTCAGACTCACACCTTTGGTGACTCCCTTCACCCTGTTCTCTGTACACTGAATATGAGCCTCCCTTTATTTACCCAACAGAGGACACCACACTACCCCTGGAAAGGCTGGGCCACCGGATTATTTTTCTAGCTCTTCAACAACAACCGTCCAACAGCAGCAGTTTGTACAGTTTTTAATCCTGTGCTTGCATCGTGAGGACTTCCAGTGCAAAGTACCATCTCAGAAAGCAGGGAATCAATGTGAAGCTTGTGCCATTAAATGCATATAACCACAGATGTTACATTGTGTTATGTACATTATACGCTGTATGTCTCCTGCCACCATTTAAAGACCAATCCTTGGATTTATGGGATGTCTATTAAGAGTAAAATCTTACAATTGAAA

Function

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32347 lncRNA downstream 1652 45003434 ~ 45005501 (-) True G23977
TU32333 lncRNA downstream 7936 44998977 ~ 44999217 (-) True G23964
TU32317 lncRNA downstream 41183 44965739 ~ 44965970 (-) True G23949
XR_005637324.1 lncRNA downstream 122815 44880670 ~ 44884338 (-) True LOC120549064
XR_005637325.1 lncRNA downstream 126644 44866130 ~ 44880509 (-) True LOC120549067
TU32357 lncRNA upstream 2740 45318607 ~ 45318882 (-) True G23986
TU32361 lncRNA upstream 14865 45330732 ~ 45330998 (-) True G23990
TU32367 lncRNA upstream 22639 45338506 ~ 45338872 (-) True G23996
TU32409 lncRNA upstream 152295 45468162 ~ 45468385 (-) True G24036
TU32410 lncRNA upstream 153992 45469859 ~ 45470303 (-) True G24037
XM_039777980.1 mRNA downstream 20527 44968198 ~ 44986626 (-) True phf12b
XM_039788116.1 mRNA downstream 182166 44816628 ~ 44824987 (-) True mrps23
XM_039789460.1 mRNA downstream 267720 44737861 ~ 44739433 (-) True LOC120551889
XM_039824994.1 mRNA downstream 893082 44098963 ~ 44114071 (-) False LOC120574575
XM_039791360.1 mRNA upstream 179670 45495537 ~ 45628896 (-) False myo18ab
XM_039791353.1 mRNA upstream 179670 45495537 ~ 45628896 (-) False myo18ab
XM_039791346.1 mRNA upstream 179670 45495537 ~ 45628896 (-) False myo18ab
XM_039791377.1 mRNA upstream 181101 45496968 ~ 45664024 (-) False myo18ab
XM_039791337.1 mRNA upstream 181101 45496968 ~ 45664024 (-) False myo18ab
unassigned_transcript_136 other downstream 80697 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 80994 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 81595 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 81893 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 84540 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 1818990 47134857 ~ 47142549 (-) False bet1l

Expression Profile