RNA id: XM_039778154.1


Basic Information

Item Value
RNA id XM_039778154.1
length 2189
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120544420
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 40227369 ~ 40260253 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCTTGCCCTGAGCATGCGCAGTAAGTGTTGACAGCTTTTCCGGTTTCACATTGTCACATGACGTGAGGAATCGATGGCCAGAAACTAACATCTCTACCCAAAATTTACCAATGGCAGTGTTATCAAGCTGACATGGCAGGCTGAGCTTGTAAGAACCATGCCGCTCCAAGATCATCGCATGTCAGTGTTCACCTTTCAGTCTGCAGTGCACAGCGCCCATGTTCTCCAGTGTCTGAATGACCAGAGGCAGCGTGACGTCCTGTGTGATGTGACGGTGGCGGTGGAAAACCAGAGTTTTCGGGCCCACTGCTCTGTCTTGGCTTCCTGCAGTGAATACTTTCACAGCAGAGTTACCAGTGTCACCAGACATAATCCCATCATCACCTTGCCTGATGAGGTGACCGTTGAGGGGTTTGAACCTTTGCTTCAATTTGCCTACACCTCGAAGCTGCCTTTCACTAAAGAAAATATTCATGCCATTCACAGCAGTGCTGAGATTTTAGGATTCCATAACTTGGAGTCGGCATGCTTTGATTTTCTCATTCCAAAGTTTTCTGAAGGCAGAAGAACCTCACGGGATGTCAGGCATAGAGCCTGTTGTCTGAGTCAGAATCCCAGTGCCAGTTTTGGCCCCAGCGTAGAGAGCAGCCAACCAAAATCATTTGAGTCACACAGCTCAGTGCCTTCAAGTGTTGATGAACAGACAGATTTCCCATCACAGTGTCCTCAGAGTACACAGGGTCAGACCAACAGCGGGGAAGAACACTTCTGTTTGGAGAACTGTGGGCCACAAATGGCCCCCTTAACTCTGGAGTTAACAGCGAATGGTGTGTGCCCCATGTTGTCTTTGCCGTGCCCAGACTCTGATAAAGCAGATCAACCCTCTCAGTTCAGCGAAAGAGACATTTTAGAGATAGGAGATGTGTGTAATCAAAGTGAGTTGAGTTTGACAGACTGTGACTTACCCTGTGAGTTGCCAAGCCCAGGGGATGGGAATCCACCAGAACTCACTGAGCCAGCAGGCAGAGATGTTAAGCAGACTGTTGAGACGCTTCGTGCTGAAACCGACTGCAACCCCGGTTCATGTCCACTCGCAGCAGGGGCAGAATATTGCCGTGAGTTATTAGAGCAGAGTAAGGCTGGCCTTGAACCCAAAATGGAAGGTGATCTCTCAGACTCTACACCAACTGATCTAAGCCACACAGAGGGAATTGGGGAGAGGAGCAGTGAGGAGAGGGAGGTGGCTGAACATCTGGCTAAGGGATTTTGGTCTGACCTATGCCCATCTCAGGCTCAACCACCCCCCTTGGAGCCCATGGACCAAAACAATCTGGCAAAAGCATCAGACTTTCATTGGCTTAAGCAGCTGGACCTGAGCTCCAGTGTAGGAGACTGTCCCTTCCTCAGGGACTTTGGGTCAGGTGATGACCCGGCCCCACGCACTGACAGCCTGTCCCAGTCAGAGAAGAGCCCCTACATGTCCTCCTCGCTCAACTCTGGGGACGACTCAGACCTGGACACGGATGGAGATACTGAGGCCAACAACAAAAGAGCAGCAGAGATTCAACTCCCATTCCCGGTGGAGCAGATCTCAGCGCTGAGCCGGGGTGCCTTCCAGCAGCTTCTGAGACAACATCAGCTGACTCAAGATCAGCAGGAGTTTGTCCATGACGTCCGTCGACGAAGCAAAAACCGCGTGGCTGCACAGCGCTGCCGAAAGAGGAAATTAGACAGCATACACCACCTAGAATGTGAAATCAAAAAATTGAAAAGTCAGAAAGAGCGGCTGCTGCAGGAGCGAACTGAGTTGGAGCAAAACCTGGAGGAGACGAGGCAGAGTCTGTGCGGGTTATGTAAGAGTGTCAGCATCGAGTCTGGCTCTGATCAGGACCACTTGGAGCTTCTTGCCAAGGTCTCCTCATCAGACTCCCCCATCTCCTCCCATAGCCTTTTGGATGAAGATGAGGAGTCCCAGATCACTATCGAAATGGCACACCACAAACATTATTCTATATATGAAGATGATGGTTGAAGGTGCTCCACCAAAGGGGACATTCTGCCAGAGGACGTGCATCTTTACTTCCTGTTGGCAGCTGGCGGATCTTGATTTTAATGCTGTATCTGGATGGAGCTTTGATCAACTCTTGCAAACGAATCAGTCCTTAAATTAAAAGAAGACAAGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636503.1 lncRNA downstream 1050 40184747 ~ 40226319 (-) True LOC120544464
TU31005 lncRNA downstream 302918 39924213 ~ 39924451 (-) True G22826
TU30987 lncRNA downstream 359882 39864821 ~ 39867487 (-) True G22811
TU30994 lncRNA downstream 369583 39857436 ~ 39857786 (-) True G22818
TU30992 lncRNA downstream 372775 39854280 ~ 39854594 (-) True G22816
TU31138 lncRNA upstream 27385 40287638 ~ 40287869 (-) True G22936
TU31163 lncRNA upstream 29767 40290020 ~ 40290467 (-) False cadm2b
TU31168 lncRNA upstream 131095 40391348 ~ 40489408 (-) True G22962
TU31175 lncRNA upstream 265316 40525569 ~ 40561333 (-) True LOC120545373
TU31176 lncRNA upstream 265316 40525569 ~ 40561333 (-) False LOC120545373
XM_039781055.1 mRNA downstream 194219 39943571 ~ 40033150 (-) True LOC120546248
XM_039781555.1 mRNA downstream 314609 39904112 ~ 39912760 (-) False LOC120546558
XM_039781551.1 mRNA downstream 314609 39904112 ~ 39912760 (-) True LOC120546558
XM_039781583.1 mRNA downstream 314611 39904112 ~ 39912758 (-) False LOC120546558
XM_039781563.1 mRNA downstream 314611 39904112 ~ 39912758 (-) False LOC120546558
XM_039789418.1 mRNA upstream 107 40260360 ~ 40268274 (-) True usp16
XM_039779615.1 mRNA upstream 29752 40290005 ~ 40470176 (-) False cadm2b
XM_039779598.1 mRNA upstream 29752 40290005 ~ 40470176 (-) True cadm2b
XM_039779607.1 mRNA upstream 29752 40290005 ~ 40469729 (-) False cadm2b
XM_039779589.1 mRNA upstream 29752 40290005 ~ 40469729 (-) False cadm2b
TU31014 other downstream 194213 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 1491546 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 1863681 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 2481099 37734865 ~ 37746270 (-) False p4ha3
XR_005636371.1 other downstream 2571574 37651459 ~ 37655795 (-) True si:ch211-105f12.2
unassigned_transcript_105 other upstream 771553 41031806 ~ 41031878 (-) True trnak-uuu_7
XR_005641814.1 other upstream 2976429 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 2976429 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 3267601 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 3267936 43528189 ~ 43528260 (-) True trnag-ucc_1

Expression Profile