RNA id: XM_039778328.1


Basic Information

Item Value
RNA id XM_039778328.1
length 501
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC120544519
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1761090 ~ 1762426 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTGaacTTCTTCTAACCCTTGCATCATTATCTCTGCATGTTTCCCCCTTGGGTCTACCAAAGGAGCCCTCGGCAGACGTCAAGCTGGCGACCTTAGCAGGAAAGAAGGACATAAAGGCCGAGGAGGAGGAACAGCCTTCAGCACctcatgcagcagcagcagcagtgaaggaggaagaggaggagtatGTGGTGGAGAAGGTTTTGGACCGCAGATTGGTGAAGGGAAGAGTAGAGTTCCTGCTGAAATGGAAGGGGTTCTCAGATGAGGATAACACATGGGAGCCGCAAGACATCCTGGACTGCCCCGACCTTATCACAgagtacatgcagaaacacgaggaggaggaggaggagaagaaggagggcaAGAGGAAAGGTGTCAGTGAGGCCTCTGGAGACTCAGAGGAGCgagggagcaagaggaagaaggaggaggtgagCCAAGGAAAGAGGTTACTCCGAACTGAAGTACCAGAAATCTAATCTCATTATCAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18260 lncRNA downstream 56078 1704488 ~ 1705012 (-) True G13723
XR_005641281.1 lncRNA downstream 66406 1684982 ~ 1694684 (-) True LOC120571736
TU18254 lncRNA downstream 72058 1688784 ~ 1689032 (-) True G13719
TU18161 lncRNA downstream 280441 1329699 ~ 1480649 (-) True G13654
TU18271 lncRNA upstream 41880 1804306 ~ 1862706 (-) True G13734
TU18163 lncRNA upstream 55636 1818062 ~ 1821409 (-) True G13656
TU18275 lncRNA upstream 59050 1821476 ~ 1826950 (-) True G13738
TU18280 lncRNA upstream 90806 1853232 ~ 1855176 (-) True G13743
XR_005641265.1 lncRNA upstream 224553 1986979 ~ 1987408 (-) True LOC120571691
XM_039820267.1 mRNA downstream 15494 1715997 ~ 1745596 (-) False LOC120571354
XM_039820283.1 mRNA downstream 15505 1715997 ~ 1745585 (-) False LOC120571354
XM_039820293.1 mRNA downstream 31727 1715997 ~ 1729363 (-) False LOC120571354
XM_039820274.1 mRNA downstream 31727 1715997 ~ 1729363 (-) False LOC120571354
XM_039778579.1 mRNA downstream 82376 1674330 ~ 1678714 (-) True LOC120544663
XM_039778594.1 mRNA upstream 32994 1795420 ~ 1944220 (-) True LOC120544669
XM_039778341.1 mRNA upstream 54154 1816580 ~ 1818524 (-) True LOC120544522
XM_039819321.1 mRNA upstream 88687 1851113 ~ 1876999 (-) False LOC120570781
XM_039819312.1 mRNA upstream 95869 1858295 ~ 1876994 (-) True LOC120570781
XM_039820540.1 mRNA upstream 117682 1880108 ~ 1884734 (-) True LOC120571537
TU18155 other downstream 379369 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 563366 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 563404 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 584347 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 783391 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 1218635 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1511250 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1512752 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1514256 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1515746 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile