RNA id: XM_039778341.1


Basic Information

Item Value
RNA id XM_039778341.1
length 1567
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120544522
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1816580 ~ 1818524 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTATGAAAGccactgtcaacactgtgacaaatccttcacaagatctggatatttaaagattcatcagagagttcacactggagacaacttacacagctgtgatcaatgtggggcagctttcacacgacGGAGTACCCTAAAAATACATCAACGTATTCACACTGTAGAGAAGCCTTatagctgtgatcaatgtggggcagctttcacacgacATAGTAATCTAAAAATAcatcaacacattcacactggagagaagccttacagctgtgatcaatgtggtaaAACCTTTTCTCATAACAGTagccttaaatctcaccagcgcattcacactggagagaagccttatagctgtgatcaatgtggggcagctttcacacgacATAGTAACCTAAAaatacatcaacgcattcacactggagataaacctCACAGCTGTGATCTATGTGGTACAACATTTTCTAGGAATGATAACCTAGAAGTGcaccgacgtgttcacactggagagaagccttacagctgtgatcaatgtgggaaaAGTTTTACTCAGCCTAGCgaccttaaatctcaccagcacattcacactggagagaagccatacagctgtgaacaatgtgggaaaagtTTTACTCAGAGTAGTAGTCTTAAAAaacaccagcgcattcacactggagagaagccgtactggtgtgagcaatgtgggaaaacattttctgtGAGTAGTCACCTTAAAtcacatcaacgcattcacactggagagaagccgtacagctgtgatcttTGTGGTAAAACTTTTTCACAGAGCAATAGCCTTGAATTTcaccgacgtgttcacactggaagaagccgtactggtgtgatcaatgtggtaaaactttttctcagagtggtaaccttaaatctcaccagcgcCTTCACTCTGCCTCGTTATGAACAAGTTTCCGAGCCAAGCTGTttccctctgcctcctcctcgtgccctgatagctgtgttgttattttctgatcttctctccacattgaaggctgaccagcAGTAACTTTATCTTCTGAACAGCTTGTACGTTATCCTGCCTAGGACTACACATCACACTCCATCCCTTTTGAAGGGATTTATTACACTCAAaattagaggtcgaccgataccGATAGCTAGGTTGGGCCGTATTTGCCGATAACTGATTAATCAACCGATagtatttacactttgaatttcgtcatggcatttatataacacatactctatggtcttacaaagctaatgtTTTTGACCGATTACAATTTAATCAATTTTTGTGACCTGGAGAGGTGTTAGGAGGAAGCTAGCTATAGCTCTGTTTGCCATTCATTCCAATGGAGAAACATCGCGGCTAGACTTTCGACATACATTCCATTCCATTTTTGTGAATTAGAGAAGTCTcgtcagggcagcggcatttcGGTGAAACGGTAACCcagaaagggtgactttgcgccggCTGCAGAGCCCCGCTGGCTGCTGATAGctctgtgcccgagtagcagtgcttcggctgtagtctacttccacccaatagtcccaagtcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18260 lncRNA downstream 111568 1704488 ~ 1705012 (-) True G13723
XR_005641281.1 lncRNA downstream 121896 1684982 ~ 1694684 (-) True LOC120571736
TU18254 lncRNA downstream 127548 1688784 ~ 1689032 (-) True G13719
TU18161 lncRNA downstream 335931 1329699 ~ 1480649 (-) True G13654
TU18275 lncRNA upstream 2952 1821476 ~ 1826950 (-) True G13738
TU18280 lncRNA upstream 34708 1853232 ~ 1855176 (-) True G13743
XR_005641265.1 lncRNA upstream 168455 1986979 ~ 1987408 (-) True LOC120571691
TU18319 lncRNA upstream 237992 2056516 ~ 2056848 (-) True G13775
TU18340 lncRNA upstream 402937 2221461 ~ 2225903 (-) True G13795
XM_039820261.1 mRNA downstream 9014 1715997 ~ 1807566 (-) True LOC120571354
XM_039820388.1 mRNA downstream 28990 1751913 ~ 1787590 (-) True LOC120571444
XM_039778328.1 mRNA downstream 54154 1761090 ~ 1762426 (-) True LOC120544519
XM_039820267.1 mRNA downstream 70984 1715997 ~ 1745596 (-) False LOC120571354
XM_039820283.1 mRNA downstream 70995 1715997 ~ 1745585 (-) False LOC120571354
XM_039819321.1 mRNA upstream 32589 1851113 ~ 1876999 (-) False LOC120570781
XM_039819312.1 mRNA upstream 39771 1858295 ~ 1876994 (-) True LOC120570781
XM_039820540.1 mRNA upstream 61584 1880108 ~ 1884734 (-) True LOC120571537
XM_039820642.1 mRNA upstream 94181 1912705 ~ 1914419 (-) True LOC120571592
XM_039778621.1 mRNA upstream 110953 1929477 ~ 1943027 (-) True LOC120544676
TU18155 other downstream 434859 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 618856 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 618894 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 639837 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 838881 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 1162537 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1455152 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1456654 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1458158 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1459648 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile