RNA id: XM_039778418.1


Basic Information

Item Value
RNA id XM_039778418.1
length 1294
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120544551
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2625373 ~ 2632329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGGGACTCCCAGCCGGTTGCAGCCGGGATCGCTTGCTCGCCGGCCGGCCTGTCATCCTGGGACGCTtgaaggaggaggagccTGCAGCCCCTCctgcagcagtgaaggaggaggaggagcctgcagcagtgaaggaggaggaggagcctgcagcagctgcagcagtgaaggaggaagaggaggagtatGTGGTGGAGAAGGTGTTGGACCACAGAGTGGTGAAGGGAAGAGTAGAGTTCCTGCTGAAATGGAAGGGGTTCTCGGATGAGGATAACACATGGGAGCCACAAGACAACCTGGACTGCCCCGACCTTATCACCgagtacatgcagaaacacaaggagaaggaggagaagaaggagggcaagaggaaagttgtcagtgaggcctcggaagactcagaggagcgagggagcaagaggaaggaggaggagaaaccGAGAGGAGGAGCGGGACCCAAACGTCACCACTGtcaacactgtgacaaatccttcacaagatctgcatatttaaagattcatcagagagttcacactggagagaatctacacagctgtgatcaatgtcgGGCAGCTTTCATAGAAAAGAGAACCCTAATAAtacaccagcgcattcacactggagaaaagccttacagctgtgatcaatgtgggaaaaccttttctcagagtGGTGGCCTTAAATGTCACCAGCGTGTTCACACTAGCGagaagccttacagctgtgatcaatgtgggaaaAGTTTTACTCATAGCAATGGCCTTAAATATCACCGacatgttcacactggagagaagccgtactggtgtgaacaatgtgggaaaacgttTTCTCAGAGTAGTAACCTTAAAACACATCAACgcgttcacactggagataaacctCACAGCTGTGATCTATGTGGGAAAACCTTTTCTAGGattgaacatttaaaaagccaccgacgtgttcacactagagagaagccgtactggtgtgatcTATGTGGGGAAACATTTTCTCTGAGTGGTCACCTTAAAAAACACCAGCGTGTTCACACTGccgtgtttcctttaggatttttttttgtggtggcaGCTCCGAACCCCGCACCCCaatgaaacggaactgacactttgctgcaacacaaacaaatatatttattcacctctattcacacacacaatgaggcatattttcagttgtgattgaactgtattttttgatttactatataggccaactttgagcTTGACATATAGACTAAGctttctgtagcaaataacaataaacccactattaatgacatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18005 lncRNA upstream 160495 2461744 ~ 2464878 (+) True G13518
TU18003 lncRNA upstream 234884 2390149 ~ 2390489 (+) True G13516
TU17971 lncRNA upstream 330485 2263464 ~ 2294888 (+) False LOC120571187
XR_005641270.1 lncRNA upstream 379912 2224840 ~ 2245461 (+) False LOC120571707
XR_005641305.1 lncRNA downstream 189831 2822160 ~ 2822855 (+) True LOC120571804
TU18498 lncRNA downstream 211726 2844055 ~ 2846365 (+) True G13920
TU18499 lncRNA downstream 214474 2846803 ~ 2847056 (+) True G13921
TU18519 lncRNA downstream 247064 2879393 ~ 2879852 (+) True G13929
TU18522 lncRNA downstream 250486 2882815 ~ 2883942 (+) True G13930
XM_039819657.1 mRNA upstream 30936 2566635 ~ 2594437 (+) True LOC120570971
XM_039819299.1 mRNA upstream 62194 2551061 ~ 2563179 (+) True LOC120570773
XM_039819810.1 mRNA upstream 84195 2507739 ~ 2541178 (+) True LOC120571101
XM_039778406.1 mRNA upstream 130163 2486924 ~ 2495210 (+) True LOC120544544
XM_039819184.1 mRNA upstream 191039 2386670 ~ 2434334 (+) True LOC120570706
XM_039820252.1 mRNA downstream 4196 2636525 ~ 2702680 (+) False LOC120571336
XM_039820064.1 mRNA downstream 26538 2658867 ~ 2672888 (+) True LOC120571227
XM_039820056.1 mRNA downstream 26546 2658875 ~ 2672650 (+) False LOC120571227
XM_039820226.1 mRNA downstream 60241 2692570 ~ 2702674 (+) False LOC120571336
XM_039820235.1 mRNA downstream 60243 2692572 ~ 2702679 (+) True LOC120571336
TU17835 other upstream 1065710 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1343780 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1626394 997866 ~ 998979 (+) True G13286
TU17630 other upstream 1859396 765539 ~ 765977 (+) True G13234
unassigned_transcript_81 other upstream 1951000 674282 ~ 674373 (+) True trnar-ucu_9
TU18043 other downstream 93990 2726319 ~ 2738188 (+) True G13555
TU18527 other downstream 316475 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 353598 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 640650 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 642148 3274477 ~ 3274667 (+) True LOC120554633

Expression Profile