RNA id: XM_039778448.1


Basic Information

Item Value
RNA id XM_039778448.1
length 828
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC120544580
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14285723 ~ 14286550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgatttTGGGGAATGACTTGGCACGTAGTAAGGTGTGGGCAGATGGCAAAATAAACGTCTTTAAGAAGCAAGCTTCAGTACTCCCTGCAAAGGTATCTCCAGATTGCAACTGTGTGTCTTTGGAGGTATTTCCAGGTTGTGCTGTTACCCGCTCTGCCTCACGCCAGGAGGATGCGGGGAAAATGTTTGCTGGTGGTCTCAGCTGGGAAACGAGCAAGAAGGATCTTAAAGATTACTTCACTAAATTTGGCGAGGTGACAGATTGCACCATAAAGCTGGACCAGCAGACAGGCTGGTCAAGGGGCTTTGGCTTCATTTTCTTTAAAGATGCAGCCAGTGCAGAAAAGGTTCTGGAACAGAAGGAGCACAGGCTAGATGGCAGAGTGATCGACCCAAGGAAAGCCATGGCCATGAAGAAGGATCCAATCAAGAAAATCTTTGTGGGAGGCCTTAACCCGGACACCTCCAAGGAAGTCATTCAGGAGTACTTTGGAACCTTTGGAGAGGTTGAGACTATTGAGCTTCCACAAGATCCAAGgacagaaaagaggaggggattTGTATTCATCACATATAAAGAAGAGACTCCTGTCAAGAAGTTTATGGAGAAGAAATACCACAATGTCGGTGGACGTAAGTGTGAGATTAAAATAGCCCAGCCCAAAGAGGtctaccagcagcagcagtatggCGGCCGTAGATACGGAGGACGCGGCAGGGGCCGTGGAGGCCAGGGCCAGAACTGGAATCAACCTGGATACAACCAGAACTATGGCTATGGACAGTCAGCCAGGGGACACGGGGCGACTGCTGGCAATCGGGAttga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23170 lncRNA downstream 35985 14247928 ~ 14249738 (-) False caln1
TU23171 lncRNA downstream 36055 14247928 ~ 14249668 (-) False caln1
TU23172 lncRNA downstream 36055 14248022 ~ 14249668 (-) False caln1
TU23145 lncRNA downstream 70009 14213848 ~ 14215714 (-) True G16942
TU23134 lncRNA downstream 145290 14138726 ~ 14140433 (-) True G16933
XR_005637815.1 lncRNA upstream 234216 14520766 ~ 14523356 (-) True LOC120551036
TU23270 lncRNA upstream 262699 14549249 ~ 14549494 (-) True G17037
TU23349 lncRNA upstream 351361 14637911 ~ 14638943 (-) True G17104
TU23356 lncRNA upstream 356361 14642911 ~ 14666603 (-) True G17106
TU23386 lncRNA upstream 833318 15119868 ~ 15129494 (-) True LOC120572551
XM_039783520.1 mRNA downstream 82416 14166113 ~ 14203307 (-) True eml2
XM_039783530.1 mRNA downstream 82417 14166113 ~ 14203306 (-) False eml2
XM_039783545.1 mRNA downstream 82418 14166113 ~ 14203305 (-) False eml2
XM_039783537.1 mRNA downstream 82418 14166113 ~ 14203305 (-) False eml2
XM_039783555.1 mRNA downstream 89647 14166113 ~ 14196076 (-) False eml2
XM_039784191.1 mRNA upstream 57569 14344119 ~ 14415376 (-) False tyw1
XM_039784200.1 mRNA upstream 58324 14344874 ~ 14415378 (-) True tyw1
XM_039792319.1 mRNA upstream 134455 14421005 ~ 14422454 (-) True LOC120553667
XM_039792380.1 mRNA upstream 136005 14422555 ~ 14498261 (-) True cldnj
XM_039792370.1 mRNA upstream 136005 14422555 ~ 14451987 (-) False cldnj
TU23133 other downstream 198959 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 462666 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 531107 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 577683 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 950584 13322868 ~ 13335139 (-) False sae1
XR_005641363.1 other upstream 1032290 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1409004 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1409004 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1416059 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 1759458 16046008 ~ 16060408 (-) False sdhdb

Expression Profile