RNA id: XM_039778532.1


Basic Information

Item Value
RNA id XM_039778532.1
length 1685
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120544633
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 1596198 ~ 1614242 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAAGTCTCGTTGTTTCACTGTGATCTCGGGCTGGCGGCGGGATAGTTGTGTTGTTTATTAGTGAGTtttaaacatagacagtataagaACGGTTTTAAGAAGACAGAGCTCCAgAATCCAGAGTGAGTCCAGCAGCCCCAGTGGACATCTGCTGGATTTCAGGacaagagaggaatggaggaggacaaccagaaccaggagcagcggagcaacaaggtccccagaagacaagcagcagactgggactctgataccagccatgttcagTCGCCCTCAGCAGACGTCAAGCTGGCGACCGTAGCAGGAAAGAAGGACGAGAAGGCCAAGGAGGAGGAGCAacctgcagcacctcctgcagcagcagtgaaggaggaagaggaggagtatGTGGTGGAGAAGGTGTTGGACCGCAGAGTGTTTAAGGGAAGAGTagagtttctgctgaaatggaagGGCTTCTTAAATGAGGATAACACATGGGAGCCGCAAGACAACCTGGACTGCCCCGACCTTATCACCgagtacatgcagaaacacaaggagaaggaggagaagaaggaggagggcaAGAGGAAAGTTGCCAGTGAGGCCTCGGGAGACTCAGAGGgagggagcaagaggaagaaggaggagaaacggagaggagagggacacaaacctttcacacgacAGAGTACCCTAAAaatacatcaacgcattcacactggagagaagccttacagctgtgatcaatgtggggcggCTTTCACAGAAAAGAGTAAGCTAAAAgtacatcaacgcattcacactaaagaaaagccttacagctgtgatctatGTGGGGCGGCTTTCACACAAAAGAGTACCCTAAAaatacatcaacgcattcacactgaagaaaagccttacagctgtgatctatGTGGTAAAAACTTTTCTCAGAGTGGTAGCCTAGAAATCCACAGACGTGTTCACACTGGCGAGAAGCCGTACCGCTGTGAACAATGCGGGGCAGCATTCACAGGGTTAAATAACTTCCAATCCCACCGActtgttcacactggagagaagccttacagctgtgatctatGTGGTAAAACCTTTTCTAGGAGTGGTAGCCTAGAAATCCACagacgtgttcacactggagataaaccctacagctgtgaacaatgcGGGGCAGCATTCACACGGTTAAATAGCTTACAAGCCcaccgacgtgttcacactggagagaagccttacagctgtgatctcTGTGGAAAAACTTTTTCTCAGAGTAGTGACCTTAAAAAACACCAGcgcgttcacactggagagaagccgtactggtgtgaacaatgtggaaaaactttttctcagaatagtaaccttaaatctcaccagcgcGTTCACACTCCCTCGTTGTGAACATGTTTCTCAGGGCTCCAGGCTAACGTTTTGCCTttgttgcactggtgcgcctaacttttttatttagatgCACCAGCACACAATTTAGgcgcacccaaatttttccttgcgTCGCCGTTAACGCTGAATTGgcatacacgatatatagctctgtatttttttaccaagtgggctaaatgttcagttttaagtcaaagccatttttcacaagctcttttattaaaacagactgtgattaaaataaaacgcAAAGACAGGGCTTCTTtaacagtttgaaaatatacagctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18161 lncRNA downstream 115549 1329699 ~ 1480649 (-) True G13654
TU18218 lncRNA downstream 131392 1413309 ~ 1464806 (-) True G13688
TU18171 lncRNA downstream 297222 1262034 ~ 1298976 (-) True G13664
TU18118 lncRNA downstream 569787 1026038 ~ 1026411 (-) True G13621
XR_005641299.1 lncRNA downstream 605163 989851 ~ 991035 (-) False LOC120571774
XR_005641281.1 lncRNA upstream 70740 1684982 ~ 1694684 (-) True LOC120571736
TU18254 lncRNA upstream 74542 1688784 ~ 1689032 (-) True G13719
TU18260 lncRNA upstream 90246 1704488 ~ 1705012 (-) True G13723
TU18271 lncRNA upstream 190064 1804306 ~ 1862706 (-) True G13734
TU18163 lncRNA upstream 203820 1818062 ~ 1821409 (-) True G13656
XM_039778521.1 mRNA downstream 10203 1502247 ~ 1585995 (-) True LOC120544624
XM_039820697.1 mRNA downstream 15169 1533279 ~ 1581029 (-) True LOC120571637
XM_039778510.1 mRNA downstream 105431 1489746 ~ 1490767 (-) True LOC120544616
XM_039819223.1 mRNA downstream 121127 1438692 ~ 1475071 (-) False LOC120570729
XM_039819243.1 mRNA downstream 121127 1438692 ~ 1475071 (-) True LOC120570729
XM_039819284.1 mRNA upstream 25263 1639505 ~ 1665468 (-) True LOC120570757
XM_039778579.1 mRNA upstream 60088 1674330 ~ 1678714 (-) True LOC120544663
XM_039820261.1 mRNA upstream 101755 1715997 ~ 1807566 (-) True LOC120571354
XM_039820267.1 mRNA upstream 101755 1715997 ~ 1745596 (-) False LOC120571354
XM_039820283.1 mRNA upstream 101755 1715997 ~ 1745585 (-) False LOC120571354
TU18155 other downstream 214477 1302896 ~ 1381721 (-) True G13651
XR_005641165.1 other downstream 398474 1166600 ~ 1197724 (-) False LOC120571038
TU18084 other downstream 398512 1127891 ~ 1197686 (-) True G13587
XR_005641166.1 other downstream 419455 1166598 ~ 1176743 (-) False LOC120571038
TU18086 other downstream 618499 969696 ~ 977699 (-) False LOC120571545
TU18607 other upstream 1366819 2981061 ~ 2984498 (-) True G13995
XR_005638387.1 other upstream 1659434 3273676 ~ 3273783 (-) True LOC120554376
XR_005638377.1 other upstream 1660936 3275178 ~ 3275285 (-) True LOC120554353
XR_005638380.1 other upstream 1662440 3276682 ~ 3276791 (-) True LOC120554360
XR_005638379.1 other upstream 1663930 3278172 ~ 3278279 (-) True LOC120554359

Expression Profile