RNA id: XM_039778684.1


Basic Information

Item Value
RNA id XM_039778684.1
length 2476
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120544728
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 2805911 ~ 2817561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGTTCTACGCGGGTAAATTAGAGCGGCGCACCCAAACACTAGGCTGCAGCGTGCAGCGTGTGGTGGTGCTCGGTGAATGAGACAGCAACTCCTCTTGGAGAGCGCAGAGGAGCTCCGATTTCTCCTGTTGAATCCAGAGTGAGTCCAGCAGCCCCAGTGGACATCTGCTGGATTTCAGGacaagagaggaatggaggaggacaaccagaaccaggagcagcggagcaacaaggtccccagaagaccagcagcagacCGGGACTCTGATACCAGccatgttcagGAGCCCTCAGCAGACGTCAAGCTGGCGACCGGAGCAGGAAAGAAGGGAAAGaaggccgaggaggaggaggagcagcctacagcacctcctgcagcagtgaaggaggaagaggaggaggaggaggagcagcctgcagcacctcctgtagctgaggaggagtatgtggtggagaaggttttggaccgcagagtggtgaagggaagagtagagtttctgctgaaatggaagGGGTTCTCCGATGAGGATAACACATGGGAGCCACAAGACAACCTGTACTGCCCCGACCTTATCACCgagtacatgcagaaacacaaggagaaggaggagggcaagaggaaagttgtcagtgaggCCTCGGGAGACTCGGAGCGAGGGAGCAAGAGGAAGGAGGGGaaacgcagaggaggagagggaccaaAACGTCACAACTGtcaacactgtgacaaatccttcacaagatctggatatttaaagattcatcagagagttcacactggagagaagccttacagctgtgatctatgtggtaaaaccttttctgaaAGTGGTagccttaaatctcaccagcgcattcacacaggagagaagccgtactggtgtgaacaatgtggaaaAACTTTTTCTGAGAGTGGCCACCTTAAaacacatcaacgcattcacactggagagaagccgtacgtgtgtgaacaatgtgggaaaactttttctgAGAGTGGTAACCTTAAaacacatcaacgcattcacactggagagaagccgtacagctgtgatctatgtggtaaaaccttttctcagagCAGTAACCTTAAAACTCACcagcgtgttcacactggagagaagttgtactggtgtgaacaatgtgggaaaactttttctctgAGTAGTGACCTTAAAAAACACCAGAgcgttcacactggagagaagccgtacagctgtgatctatgtggtaaaacattttctcagaGTAATAGCCTTAAAAgacaccagcgcattcacactggagagaagccgcactggtgtgaacaatgtgggaaaacgttTTCTCAGAGTGGTCACCTTAAAAACCACCAGCTCATTCACACTGCCTCGTTGTGAACATGTTTCcgagccaagctgtttcctcctgcctcctcctcatgccctgatagctgtgttgttattttctgatcttctctccacattgaaggctgaccagcAGTAACTTTATCTTCTGAACAGCATGTATGTTATCCTGGCTAGGACTACACATTACACTCCCTCCCTTTTGAAAGGCTGTATTCCACTCAAAATTAGTTAGTTTTCCTGTAATAAAGTTCAGGGTTCAACTGCTAGCGCTTTTTAACTAATGCTGCAGCGAAGAAGTGTTTGTTGTTCTTAATTAATCACCTGGTAAATACAATTTACAGAAATTCCGACCTCTGTTTACTACGGTGATGTCAAGTTGCTTCACTTTATTGTCACTGTAGACGACAAAAGCTTTAATCAGaatatggctgctgctgcctaAAAAATGACTTGAACAGTTGATGTGTTTAAACTGCGTCTgtgccgccgccatcttgggacAGACAACGGATCTTAAAGACTCAGAAAAAGATAGTTGTACTGCTTTTGGATGttcatgtgaaagaaatgctaaactaagcaaaatggaataacatttcacggatgaaattttttttttacaatattattattattaaagggtTGAATTCAATATCACAAAAGGTAACATTAATCCTTCTTTTAAGCTAACCGTAAGTTAAGTGACTGTCCTGATACTGAAttgagctaatgctagcttgtcagGTCATGTATGTTTTATCTAAGTGATTATTAATATCTCAGTAAGATGCTGAAAACtatgtttgttatgtgtgtCACTGAACAGTTCCTCACGTCATTCCCCATAGACCCCATGTGAAAAAATCAGAACTTTTcatcagaaatatataaatgtttacagcctggtacaaaaaaaagaaaacggttTTGGTCTATGAAGCTAATTTCACACTTCATAACAACTGTTTATATCACTCACCTGTTTAAATTGTATCAAGGCTTAAATCAGCAGACTGTTACTagctttaaaatattttgaaaaagtttgGTAATAAAACCTGCATTTTTCAAGTAACCTGTATTATAAATACATGTCTGACAGCTGTAGTAAACCGCTTGAAAATCA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18023 lncRNA upstream 38587 2595382 ~ 2767324 (+) True G13535
TU18019 lncRNA upstream 134308 2561855 ~ 2671603 (+) True G13531
TU18005 lncRNA upstream 341033 2461744 ~ 2464878 (+) True G13518
TU18003 lncRNA upstream 415422 2390149 ~ 2390489 (+) True G13516
TU17971 lncRNA upstream 511023 2263464 ~ 2294888 (+) False LOC120571187
XR_005641305.1 lncRNA downstream 4599 2822160 ~ 2822855 (+) True LOC120571804
TU18498 lncRNA downstream 26494 2844055 ~ 2846365 (+) True G13920
TU18499 lncRNA downstream 29242 2846803 ~ 2847056 (+) True G13921
TU18519 lncRNA downstream 61832 2879393 ~ 2879852 (+) True G13929
TU18522 lncRNA downstream 65254 2882815 ~ 2883942 (+) True G13930
XM_039778673.1 mRNA upstream 6584 2797986 ~ 2799327 (+) True LOC120544717
XM_039819842.1 mRNA upstream 13066 2610921 ~ 2792845 (+) True LOC120571130
XM_039819832.1 mRNA upstream 13066 2610921 ~ 2792845 (+) False LOC120571130
XM_039820318.1 mRNA upstream 20703 2711676 ~ 2785208 (+) True LOC120571388
XM_039778428.1 mRNA upstream 45980 2742353 ~ 2759931 (+) True LOC120544561
XM_039819406.1 mRNA downstream 35657 2853218 ~ 2872402 (+) True LOC120570832
XM_039819372.1 mRNA downstream 71464 2889025 ~ 2934705 (+) False LOC120570793
XM_039819364.1 mRNA downstream 71466 2889027 ~ 2934704 (+) False LOC120570793
XM_039819368.1 mRNA downstream 71468 2889029 ~ 2934704 (+) False LOC120570793
XM_039819346.1 mRNA downstream 71469 2889030 ~ 2934704 (+) True LOC120570793
TU18043 other upstream 67723 2726319 ~ 2738188 (+) True G13555
XR_005641197.1 other upstream 179618 2610872 ~ 2626293 (+) False LOC120571130
TU17835 other upstream 1246248 1551864 ~ 1559663 (+) True G13390
TU17665 other upstream 1524318 1182382 ~ 1281593 (+) True G13262
TU17709 other upstream 1806932 997866 ~ 998979 (+) True G13286
TU18527 other downstream 131243 2948804 ~ 2960259 (+) False zgc:162872
TU18541 other downstream 168366 2985927 ~ 2996305 (+) False LOC120544739
XR_005638531.1 other downstream 455418 3272979 ~ 3273169 (+) True LOC120554600
XR_005638540.1 other downstream 456916 3274477 ~ 3274667 (+) True LOC120554633
XR_005638533.1 other downstream 458419 3275980 ~ 3276171 (+) True LOC120554604

Expression Profile